G427866


Basic Information

Item Value
gene id G427866
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16220030 ~ 16220408 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU491296
GACCGTTAGCATCAAAAATGACCAAAGAGTTTCGATATTTTTCCTATTTAAAACTTGAGGATATTATGATGATATATTACGCAGCGTCTCTCACAAATGTCTCCATGGTTGCAAGGCACGCTCCCTGTGCATACAGGGGGTCACAGGCGCTGCGTAATATCATTGCGCCTGCTGCACCCATGGTACGGCAGCAAAGTTCCTTGATTATTATGCTGGAATGACAGTATAGTTCCTAGCCATATTGGCCTAGAAAATTGCAACTTTTCATTTTCCGTTGGTCTTGGTACACGATGTAACTACAGAAGAGTCAAGTTTTAAATAGGAAAAATATCTAAACTCTTTTGTCATTTTTGTGCGAGATGCTAACGGTCTAATCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU491296 True 379 lncRNA 0.41 1 16220030 16220408

Neighbor

gene id symbol gene type direction distance location
CI01000304_16146512_16201457 RYR1, RYR1A coding upstream 17925 16146201 ~ 16202105 (+)
CI01000304_16138794_16144084 NA coding upstream 75793 16138794 ~ 16144237 (+)
CI01000304_16132778_16137222 MDH2.S, MDH2, MDH2.L coding upstream 82682 16131875 ~ 16137348 (+)
CI01000304_16109760_16122597 NA coding upstream 97156 16107378 ~ 16122874 (+)
CI01000304_16040037_16043960 NA coding upstream 176070 16040037 ~ 16043960 (+)
CI01000304_16228517_16231072 CUNH21ORF59, CSSA11H21ORF59, CLG07H21ORF59, C19H21ORF59, C10H21ORF59, CSGR11H21ORF59, CLG14H21ORF59, C16H21ORF59 coding downstream 8109 16228517 ~ 16231553 (+)
CI01000304_16238051_16240914 MIS18A coding downstream 17643 16238051 ~ 16241294 (+)
CI01000304_16255785_16257956 NA coding downstream 35377 16255785 ~ 16258152 (+)
CI01000304_16261912_16276701 B3GLCTB coding downstream 41504 16261912 ~ 16277453 (+)
CI01000304_16315830_16336387 RXFP2A coding downstream 94760 16315168 ~ 16336928 (+)
G427868 NA non-coding upstream 93 16218447 ~ 16219937 (+)
G428027 NA non-coding upstream 89950 16129707 ~ 16130080 (+)
G427864 NA non-coding upstream 122537 16091400 ~ 16097493 (+)
G428020 NA non-coding upstream 130858 16088069 ~ 16089172 (+)
G427855 NA non-coding upstream 151047 16067748 ~ 16068983 (+)
G428069 NA non-coding downstream 202339 16422747 ~ 16422949 (+)
G428099 NA non-coding downstream 254814 16475222 ~ 16555622 (+)
G428116 NA non-coding downstream 429484 16649892 ~ 16654939 (+)
G428188 NA non-coding downstream 511199 16731607 ~ 16731828 (+)
G428197 NA non-coding downstream 558955 16779363 ~ 16780995 (+)
G428017 NA other upstream 136316 16083230 ~ 16083714 (+)
G427860 NA other upstream 330439 15885454 ~ 15889591 (+)
G426828 NA other upstream 1269438 14948890 ~ 14950592 (+)
G426312 NA other upstream 1889144 14330048 ~ 14330886 (+)
CI01000304_13578347_13595075 NA other upstream 2641183 13578049 ~ 13595097 (+)
CI01000304_16505174_16506124 NA other downstream 284454 16504764 ~ 16513625 (+)
CI01000304_16761621_16764983 EXOSC8 other downstream 535538 16761372 ~ 16765057 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A other downstream 790322 17009769 ~ 17023882 (+)
CI01000304_17315088_17315342 NA other downstream 1094430 17315087 ~ 17315600 (+)
G429050 NA other downstream 1461863 17682271 ~ 17684763 (+)

Expression


Co-expression Network