G428681


Basic Information

Item Value
gene id G428681
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16603550 ~ 16609014 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU492216
TAAAATGTTATAAAGGGAGGGCAGTTCAAACAAGAATTCATAGGGAAGGCAGTTCAAATAAGCACTTAGGTCCCTTGTGATGGGTTATGAGGCAAGAGGAAATGTGATTGATGCAGCTGTGACAGTCCAAATCTATTTCAGTTACATAACCAGACCATGCAAGAGCTGTTTGTCCCTGAGGCCTCACCGTATTCCATTCCTCTGGTCAAAGGCAGGGATCATGGAGGCGGGGTGCTCAGACATGAGTGCGACCAAGAGCTGTAGCACATCATGGATGTTTTCGTCCTCATGCATGGTTAGCAGGTAGTTTAATATGCTCTGCAACTCATCTTCCTTCACTCCTCG
>TU492217
GAGCGTGTTGTAGGTGGTGATGGTCACAGTGCTGGTGTGCATCATTAGTCGTTCTCCGAGCAACGTGAAGAGGCTGTGTGTGTGCATGATCTCCACCTTCCTCTTGTGTCCAAGATGTTTCAGGAAGTAGCCTAGAACTTTTAGAGCTTGGACTCGTATACTCTCGCTTTTGGAGGCCAGGAGCTTGTAGATGACTCGTATTCCATTCCTCTGGTCAAAGGCAGGGATCATGGAGGCGGGGTGCTCAGACATGAGTGCGACCAAGAGCTGTAGCACATCATGGATGTTTTCGTCCTCATGCATGGTTAGCAGGTAGTTTAATATGCTCTGCAACTCATCTTCCTTCACTCCTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU492216 False 345 lncRNA 0.46 2 16603550 16604288
TU492217 True 354 lncRNA 0.50 4 16603550 16609014

Neighbor

gene id symbol gene type direction distance location
CI01000304_16451635_16453520 NA coding downstream 146993 16451377 ~ 16456557 (-)
CI01000304_16414561_16417605 RFC3 coding downstream 185945 16414502 ~ 16417605 (-)
CI01000304_16402321_16404006 NA coding downstream 199544 16401611 ~ 16404006 (-)
CI01000304_16305853_16306849 NA coding downstream 296649 16305388 ~ 16306901 (-)
CI01000304_16247523_16254506 HUNK coding downstream 349044 16246383 ~ 16254506 (-)
CI01000304_16651076_16668623 DCLK1, DCLK1A, DCLK2 coding upstream 40852 16649866 ~ 16668915 (-)
CI01000304_16684166_16704849 DCLK1 coding upstream 75046 16684060 ~ 16706094 (-)
CI01000304_16711244_16719831 SPG20A, SPG20 coding upstream 102230 16711244 ~ 16719831 (-)
CI01000304_16722727_16724691 CCNA1 coding upstream 113553 16722567 ~ 16724848 (-)
CI01000304_16746258_16751678 SMAD9.S, SMAD8A, SMAD9, SMAD8C coding upstream 136689 16745703 ~ 16751678 (-)
G428638 NA non-coding downstream 9041 16587475 ~ 16594509 (-)
G428547 NA non-coding downstream 323029 16280266 ~ 16280521 (-)
G428502 NA non-coding downstream 383137 16220029 ~ 16220413 (-)
G428509 NA non-coding downstream 383658 16218523 ~ 16219892 (-)
G428506 NA non-coding downstream 387524 16209089 ~ 16216026 (-)
G428707 NA non-coding upstream 203170 16812184 ~ 16812467 (-)
G428710 NA non-coding upstream 270055 16879069 ~ 16879279 (-)
G428662 NA non-coding upstream 277440 16886454 ~ 16886952 (-)
G428713 NA non-coding upstream 305795 16914809 ~ 16916803 (-)
G428729 NA non-coding upstream 342187 16951201 ~ 16955072 (-)
G427376 NA other downstream 1342145 15258964 ~ 15261405 (-)
G427423 NA other downstream 2241658 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 2315946 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 2333979 14265476 ~ 14269571 (-)
G427309 NA other downstream 2395251 14181932 ~ 14237078 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other upstream 170350 16769417 ~ 16780398 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 245551 16854565 ~ 16860911 (-)
G429331 NA other upstream 1314849 17923863 ~ 17924684 (-)
G429499 NA other upstream 1628705 18237719 ~ 18238319 (-)
G429673 NA other upstream 1977428 18586442 ~ 18591856 (-)

Expression


Co-expression Network