G428260


Basic Information

Item Value
gene id G428260
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17048032 ~ 17049987 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU491744
CAAAGTAGACTAATCCTTTAAAGTCATTTTTAAAGGGGTCCTTGATTATGATTTCACTTTTTTAACTTTAGTTAGTATATAATGTTGCTGTTTGAGCATAAACAACATCTGCAAAGTGACGATGCTCAAAGTTTAATGCAAAGGGAGATATTTTCTTTTACTGAAATCGCTTTTTAAGGACTACAACAAACGGCTGGTAGGGACTTCTTTCCGGGTTGGTGACAAAACAAACCCCAACATTTACATAAAACCTGCTCCCGGGAACACGCAACAAAGGGGGTGAGGCCATGTTGGGCTGCTTTAGAGAAGAGGAAGAGTTGACGTAGAGTGTTGTTACCACGCCGTCATTTTACGCCGGACTGCTTCACAAACGAGAGTCAATTCAACGTTGGATTTGCACAAAAGATTAACATGACGGCACATGATAGTTGATGAGTTGAATCAACTCCACAGCAACTACATAAATTTATCCACTAACCATTCAGAAACGTCCAGTTGCACTCTAAAAGTTGTAACTTCTTCCTGAGTCTCTCCATCAGTGTCCGACTCCGGTTTGAACAATGTAAGGCTGAACACCGTTACGCCCGTTTCACACTGCAAGCTTTAGCAGCACGTGAGCGTAACTACATCGTCACTGCAGCTGCAGAGACGCGCGAGTATTCACACTGGAAGCGTCTGTACAGCGTCACAGCAGTGGCTCGAAGCTACATAAAGTGAGCATTTCTTTACAAAGACAGCTATAAATTTGTTTTTATAAGTTGGTCATTTATAAACGTGATAGTCTTGAAAGTTTGTTAACATGGGGAGGTGTACAACATTCGCATATAAACTTAAATAAATAAAAATAAATAAATAGTCTCGTGTCATCCATTGCTGCACATGAATGAGGTAAGCTTTGTGTTTTACATCATCTGCCGCGTGCACGTTTACAAGACCGCAAACTCGGCGAAAAAAGCCAGCAAACTCGGGTTTGATTTGGGAATGCTGCAACCTATATATCTCTCTGTGTAATAACTAAAATAATGTTTATATATCACATTTTCTGGCTAGTTTACTATAGTTTTTTATAATACACCATACTTTAACCCAAAACTGAATAATTAAAAACAAGTTTAAATGGGTAAATCTTCTATAAATATTTTTGATTCTTAATTTTCTTTTCTGTCATACTCAAATTCTTGTTAAAACACATTAGACATGCTTATTCTGTGCATTTTGAGCACTTTTTGTGTGAAATTATATTTATTTTGTCCATCAAAAGTGTACTTTCACTTTAATTGAGCGTCAGCAGCGCAGCAAAAATAGACTCGGCGCCGAAACCCCCGCTTCACTGCTGCTTACGCGACGCTCCTGCTTGACGCTTACACGCTGCTCCTGCTGCCGGTGTGAATGCACTCACTGATTAACATGCACGCCGAAAAAAATATGCGCTGCTTACACTTGCAGTGTGAAACTGGCGTTACTGACAATCGTCATTTTGGCTGCGTGAGATTCTCCAGCTTTGTTGTTGTTGAGCAACCGAAGCGCGAGATGTTAAAGCACCGCCCTCTTCTGGAAAGGGGGCCGGGAGCAGCAGCTCATTTACATTTAAAGGGACACACACAAAAACAGCATGTTTTTGCTCACACCCAAATAGGGGCAAATTTGCTATAAGCTATAATAAATGATCTGTGGGGTATTTTGAGCTGAAACTTCACAGACACATTCTGGGGACACCAGAGACTTATATCTTGTAAAAGGGACATTATAGGTCCGCTTTAAGGTTCAGATCAGAAAGCTAAAGCTAAAGCTAATCAACTGCACATTTTCACTTGAAAAGTGAACAGTGAACAGTTTTCCTTTACATTTTCTACTGTATTGTATTCTTCTGTCACCGACTGCAATGTGGATGACGCACCCAAGATTTCACTCTTGCATATAGTGCAGTGATTTAATGTGTATCTTGTTAAAGAAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU491744 True 1956 lncRNA 0.40 1 17048032 17049987

Neighbor

gene id symbol gene type direction distance location
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A coding upstream 24442 17009769 ~ 17023882 (+)
CI01000304_16975753_16997470 PHLDB2A coding upstream 50546 16975254 ~ 16997486 (+)
CI01000304_16969702_16974059 NA coding upstream 73603 16969702 ~ 16974429 (+)
CI01000304_16954628_16965188 NA coding upstream 82432 16954628 ~ 16965600 (+)
CI01000304_16914506_16925875 NA coding upstream 121906 16914506 ~ 16926126 (+)
CI01000304_17054994_17056008 NA coding downstream 4862 17054849 ~ 17059151 (+)
CI01000304_17210568_17214463 NA coding downstream 160581 17210568 ~ 17214638 (+)
CI01000304_17266905_17272656 SMYD4 coding downstream 216257 17266244 ~ 17272740 (+)
CI01000304_17290004_17290901 NA coding downstream 240017 17290004 ~ 17292234 (+)
CI01000304_17315088_17315342 NA coding downstream 265101 17315087 ~ 17315600 (+)
G428255 NA non-coding upstream 5603 17042203 ~ 17042429 (+)
G428153 NA non-coding upstream 22744 17024057 ~ 17025288 (+)
G428232 NA non-coding upstream 194265 16853550 ~ 16853767 (+)
G428201 NA non-coding upstream 255409 16792293 ~ 16792623 (+)
G428262 NA non-coding downstream 408 17050395 ~ 17050678 (+)
G428182 NA non-coding downstream 76034 17126021 ~ 17134275 (+)
G428307 NA non-coding downstream 236243 17286230 ~ 17286443 (+)
G428308 NA non-coding downstream 236764 17286751 ~ 17287056 (+)
CI01000304_16761621_16764983 EXOSC8 other upstream 286380 16761372 ~ 16765057 (+)
CI01000304_16505174_16506124 NA other upstream 506987 16504764 ~ 16513625 (+)
G428017 NA other upstream 964318 16083230 ~ 16083714 (+)
G427860 NA other upstream 1158441 15885454 ~ 15889591 (+)
G429050 NA other downstream 632284 17682271 ~ 17684763 (+)
CI01000304_17698564_17703891 NA other downstream 653323 17698467 ~ 17704096 (+)

Expression


Co-expression Network