Gene
RNA
| Item | Value |
|---|---|
| gene id | G428724 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 17057985 ~ 17059153 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU492266 | True | 1169 | lncRNA | 0.31 | 1 | 17057985 | 17059153 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_17026143_17041443 | NA | coding | downstream | 16449 | 17026066 ~ 17041536 (-) |
| CI01000304_17003708_17006278 | NA | coding | downstream | 51602 | 17003365 ~ 17006383 (-) |
| CI01000304_16929873_16945323 | GABRR3A, GABRR3 | coding | downstream | 111158 | 16929448 ~ 16946827 (-) |
| CI01000304_16902774_16907628 | RHBDD2 | coding | downstream | 149166 | 16902100 ~ 16908819 (-) |
| CI01000304_16874485_16876468 | NA | coding | downstream | 181517 | 16874275 ~ 16876468 (-) |
| CI01000304_17067366_17070132 | OVCA2 | coding | upstream | 8177 | 17067330 ~ 17070132 (-) |
| CI01000304_17318429_17320775 | OR109-13 | coding | upstream | 259271 | 17318424 ~ 17320898 (-) |
| CI01000304_17332233_17338077 | NA | coding | upstream | 273080 | 17332233 ~ 17338077 (-) |
| CI01000304_17348461_17354382 | NA | coding | upstream | 288926 | 17348079 ~ 17354622 (-) |
| CI01000304_17369357_17411120 | NA | coding | upstream | 310001 | 17369154 ~ 17411203 (-) |
| G428726 | NA | non-coding | downstream | 1544 | 17054528 ~ 17056441 (-) |
| G428721 | NA | non-coding | downstream | 32697 | 17024068 ~ 17025288 (-) |
| G428760 | NA | non-coding | downstream | 45021 | 17010779 ~ 17012964 (-) |
| G428735 | NA | non-coding | downstream | 96653 | 16961099 ~ 16961332 (-) |
| G428729 | NA | non-coding | downstream | 102913 | 16951201 ~ 16955072 (-) |
| G428763 | NA | non-coding | upstream | 2697 | 17061850 ~ 17062111 (-) |
| G428807 | NA | non-coding | upstream | 62439 | 17121592 ~ 17147286 (-) |
| G428816 | NA | non-coding | upstream | 76980 | 17136133 ~ 17136684 (-) |
| G428837 | NA | non-coding | upstream | 110178 | 17169331 ~ 17216801 (-) |
| G428859 | NA | non-coding | upstream | 160594 | 17219747 ~ 17220001 (-) |
| CI01000304_16854877_16860888 | YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC | other | downstream | 190747 | 16854565 ~ 16860911 (-) |
| CI01000304_16769537_16780398 | SUPT20, SUPT20H | other | downstream | 277026 | 16769417 ~ 16780398 (-) |
| G427376 | NA | other | downstream | 1796580 | 15258964 ~ 15261405 (-) |
| G427423 | NA | other | downstream | 2696093 | 14361448 ~ 14361892 (-) |
| CI01000304_14286960_14294449 | NA | other | downstream | 2770381 | 14286960 ~ 14294449 (-) |
| G429331 | NA | other | upstream | 864710 | 17923863 ~ 17924684 (-) |
| G429499 | NA | other | upstream | 1178566 | 18237719 ~ 18238319 (-) |
| G429673 | NA | other | upstream | 1527289 | 18586442 ~ 18591856 (-) |
