G428307


Basic Information

Item Value
gene id G428307
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17286230 ~ 17286443 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU491795
AAAGGATTTACACTATGCATTATGTCTATTAATTCCAAACCATATTTGGTGTCATATTGCATTTCTCTTACTTTCTGGCTAAAGACCTGCTACAGCACAAGTGACAGACATGGTGACACTTTGCCAACTGTGATACTCCAGACAGCCTCAAGGATGAAGTAATGTACCCGGCCAAGATGCCCATTTGGAACATGATAGCTCATATCTGTTGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU491795 True 214 lncRNA 0.41 1 17286230 17286443

Neighbor

gene id symbol gene type direction distance location
CI01000304_17266905_17272656 SMYD4 coding upstream 13490 17266244 ~ 17272740 (+)
CI01000304_17210568_17214463 NA coding upstream 71592 17210568 ~ 17214638 (+)
CI01000304_17054994_17056008 NA coding upstream 229153 17054849 ~ 17059151 (+)
CI01000304_17009769_17023302 ZDHHC20, ZDHHC20A coding upstream 262640 17009769 ~ 17023882 (+)
CI01000304_16975753_16997470 PHLDB2A coding upstream 288744 16975254 ~ 16997486 (+)
CI01000304_17290004_17290901 NA coding downstream 3561 17290004 ~ 17292234 (+)
CI01000304_17315088_17315342 NA coding downstream 28645 17315087 ~ 17315600 (+)
CI01000304_17453343_17454323 OR106-11, OR106-12, OR106-2, OR106-1 coding downstream 166509 17452952 ~ 17454439 (+)
CI01000304_17470746_17471711 OR106-1 coding downstream 183909 17470352 ~ 17471840 (+)
CI01000304_17478774_17479733 OR106-11, OR106-12, OR106-2, OR106-3, OR106-1 coding downstream 191914 17478357 ~ 17480784 (+)
G428182 NA non-coding upstream 151955 17126021 ~ 17134275 (+)
G428262 NA non-coding upstream 235552 17050395 ~ 17050678 (+)
G428260 NA non-coding upstream 236243 17048032 ~ 17049987 (+)
G428255 NA non-coding upstream 243801 17042203 ~ 17042429 (+)
G428308 NA non-coding downstream 308 17286751 ~ 17287056 (+)
G428316 NA non-coding downstream 11759 17298202 ~ 17298668 (+)
G428916 NA non-coding downstream 52040 17338483 ~ 17338687 (+)
G428954 NA non-coding downstream 156491 17442934 ~ 17443324 (+)
G428955 NA non-coding downstream 157071 17443514 ~ 17443715 (+)
CI01000304_16761621_16764983 EXOSC8 other upstream 524578 16761372 ~ 16765057 (+)
CI01000304_16505174_16506124 NA other upstream 745185 16504764 ~ 16513625 (+)
G428017 NA other upstream 1202516 16083230 ~ 16083714 (+)
G427860 NA other upstream 1396639 15885454 ~ 15889591 (+)
G429050 NA other downstream 395828 17682271 ~ 17684763 (+)
CI01000304_17698564_17703891 NA other downstream 416867 17698467 ~ 17704096 (+)

Expression


Co-expression Network