G429202


Basic Information

Item Value
gene id G429202
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17659874 ~ 17704143 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU492809
GAATCAAGGGAACTTTTTTTTTATTTATGTTTTTTTTTCTTCAGCAAATGTCATTTGGGGGTCAAAAAGTCCTCAAATAGCTTACAAAGGTTAAGAGCCTAATTTTATTGGCAGATTCTGAAAGACAGAAAGAACCATGTAAAATCCAAAGATCAAGTTTAATAGACATGTAAACAATTCACACAGAAAATCTAAAGTAAAGAGAAAGTTAGAACCACATCAGCAAAGCTCAACTAACTGCATTCTCTGCTTTTAAAGAGGAGTGACCCAGTTATGGCGAGCTGCCATCATGGCCCGTTTCAGCTGTTCGTAGGTGACAAACATAACCACATTCCAGGAGCCCAGCCTCAGGAACGATGGCATGAATCTAAAAAGAGAACAAACATGTCAATTCTACATTCATCTTCAAATCATTAAAGTACAGCTATAGTTGGTAAAGAAAACCAACCCCTTGTAAAAAGCCTTTGGTCCCTCTTTAGTTAGCATGGCTACAGCACAGTTGAGGGCACCGCTGTACTGGCCCTGGGCGGAGTTCATGTATCTTGTCTTCACAACATCAACAGGAGAAGCAATAACTGTAGTGCAGAAACCAGCTCCAAATGCAGATGTGAAGTGGCAGGGAAGATCATCTGTGAAGAACAGCAGCTATAAATACTTCTGTCATGGTCTGATACTTCAGTTTGCAGTACTTTCTGCAGCCTCATCTTACCAGTCATCAGCGAGGATTTTAGAAGTGCGTCTTTGATGAGGTCATAGGTCACCAGCTCAGTGCAGTTTACAATGGCATTGCGGGTGATGTTTGGGCCAGTTCCTTTGAAAGGATAGAAAGGGTAGTATAAATTAGAAAAGAGAGAATAAGGTTANTTAATAATAATAATAATAATAATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU492809 True 888 lncRNA 0.39 2 17659874 17704143

Neighbor

gene id symbol gene type direction distance location
CI01000304_17614848_17642103 NIPBLB, NIPBL coding downstream 17771 17614725 ~ 17642103 (-)
CI01000304_17613042_17613658 NA coding downstream 45821 17612666 ~ 17614053 (-)
CI01000304_17609266_17610594 MEDAG coding downstream 49280 17609243 ~ 17610594 (-)
CI01000304_17584110_17585466 HMGB1B, HMGB1, HMGB1A coding downstream 74205 17583860 ~ 17585669 (-)
CI01000304_17582446_17582872 NA coding downstream 77002 17582244 ~ 17582872 (-)
CI01000304_17705069_17711334 DNAJB13 coding upstream 890 17705033 ~ 17712467 (-)
CI01000304_17722987_17728462 PLEKHB1 coding upstream 17064 17721207 ~ 17728565 (-)
CI01000304_17748958_17752035 DHRS13A.2 coding upstream 44243 17748386 ~ 17752035 (-)
CI01000304_17753888_17759116 DHRS13A.1 coding upstream 49580 17753723 ~ 17759116 (-)
CI01000304_17761838_17774880 PHF12A coding upstream 57407 17761550 ~ 17774880 (-)
G429220 NA non-coding downstream 91057 17565702 ~ 17568817 (-)
G429238 NA non-coding downstream 95476 17564100 ~ 17564398 (-)
G429216 NA non-coding downstream 130163 17529318 ~ 17529711 (-)
G429266 NA non-coding downstream 136159 17523382 ~ 17523715 (-)
G429172 NA non-coding downstream 299782 17344902 ~ 17360092 (-)
G429224 NA non-coding upstream 14803 17718946 ~ 17794447 (-)
G429300 NA non-coding upstream 116617 17820760 ~ 17821223 (-)
G429301 NA non-coding upstream 118016 17822159 ~ 17822403 (-)
G429303 NA non-coding upstream 121299 17825442 ~ 17825664 (-)
G429305 NA non-coding upstream 123858 17828001 ~ 17828552 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other downstream 792636 16854565 ~ 16860911 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other downstream 878915 16769417 ~ 16780398 (-)
G427376 NA other downstream 2398469 15258964 ~ 15261405 (-)
G427423 NA other downstream 3297982 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 3372270 14286960 ~ 14294449 (-)
G429331 NA other upstream 219720 17923863 ~ 17924684 (-)
G429499 NA other upstream 533576 18237719 ~ 18238319 (-)
G429673 NA other upstream 882299 18586442 ~ 18591856 (-)

Expression


Co-expression Network