Gene
RNA
| Item | Value |
|---|---|
| gene id | G429396 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 18232712 ~ 18234603 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU493020 | True | 1435 | lncRNA | 0.38 | 2 | 18232712 | 18234603 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_18021327_18022049 | NA | coding | downstream | 210603 | 18021051 ~ 18022109 (-) |
| CI01000304_18018841_18019759 | NA | coding | downstream | 212218 | 18018841 ~ 18020494 (-) |
| CI01000304_18010568_18011800 | NA | coding | downstream | 220878 | 18010254 ~ 18011834 (-) |
| CI01000304_18007357_18007779 | NA | coding | downstream | 224690 | 18007055 ~ 18008022 (-) |
| CI01000304_17837247_17882808 | MYO18AA | coding | downstream | 348752 | 17837247 ~ 17883960 (-) |
| CI01000304_18343532_18348936 | NA | coding | upstream | 108678 | 18343281 ~ 18349633 (-) |
| CI01000304_18356754_18371739 | NA | coding | upstream | 122091 | 18349995 ~ 18373932 (-) |
| CI01000304_18419836_18444486 | USP25 | coding | upstream | 184471 | 18419074 ~ 18444486 (-) |
| CI01000304_18456463_18461381 | NRIP1B | coding | upstream | 221758 | 18456361 ~ 18461381 (-) |
| CI01000304_18481215_18483117 | NA | coding | upstream | 246521 | 18481124 ~ 18484668 (-) |
| G429381 | NA | non-coding | downstream | 196725 | 18035487 ~ 18035987 (-) |
| G429391 | NA | non-coding | downstream | 235441 | 17995452 ~ 17997271 (-) |
| G429382 | NA | non-coding | downstream | 253476 | 17978929 ~ 17979236 (-) |
| G429322 | NA | non-coding | downstream | 316595 | 17915911 ~ 17916117 (-) |
| G429321 | NA | non-coding | downstream | 316818 | 17915591 ~ 17915894 (-) |
| G429525 | NA | non-coding | upstream | 56901 | 18291504 ~ 18291749 (-) |
| G429697 | NA | non-coding | upstream | 97133 | 18331736 ~ 18332032 (-) |
| G429686 | NA | non-coding | upstream | 146352 | 18380955 ~ 18387866 (-) |
| G429331 | NA | other | downstream | 308028 | 17923863 ~ 17924684 (-) |
| CI01000304_16854877_16860888 | YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC | other | downstream | 1365474 | 16854565 ~ 16860911 (-) |
| CI01000304_16769537_16780398 | SUPT20, SUPT20H | other | downstream | 1451753 | 16769417 ~ 16780398 (-) |
| G427376 | NA | other | downstream | 2971307 | 15258964 ~ 15261405 (-) |
| G427423 | NA | other | downstream | 3870820 | 14361448 ~ 14361892 (-) |
| G429499 | NA | other | upstream | 3116 | 18237719 ~ 18238319 (-) |
| G429673 | NA | other | upstream | 351839 | 18586442 ~ 18591856 (-) |
