CI01000306_00235686_00242814


Basic Information

Item Value
gene id CI01000306_00235686_00242814
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 235447 ~ 242861 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_00235686_00242814.mRNA
ATATTAAAACAATTGTTAAACAATAAATCCATAATATCTAATCTCACATTAAACGCGAAAAACAGTCATAAAGGAATGTAGTAACCATAATAATGGGATTCGGAAATGATCAGATGCCAAATACGGAAGTTAATTTAAATATTTCGGTGAATCGAAAGTGTTTTTAACGACACATGCCGTTGTAGCGCTTTTGCATTTTAAATTTAAGCGGTTACAGACAAACAAACAAAAGTGCAGTGATGGAGCGCATGAACATGATTAATTATATCAGTGATCTGAATGAGAAGACTCGCTCTTTATTAATGACGAAACTCAACAAGCACTTGAGCAGGAGAAGAACAACAACAGGGAGTTTGGAAGACACCCTAAAGAGCCTACAGGATATTTATGGAGAGAAAAGAGCATTAAAAAAGGTCAAGTCCATAGTGAAAAAAATCAGAAAACAAATGGATATCAAAAATGGTGGCAGTGTTCAAACACATTCTGGAAACAACCTTCCACAACAACAGCATAATAATAATAATAATTCTACATTACTCGGGCAACCATCGATTCAGAACCCAAATAACATTACAATTCACCAGAAGGATGGTGGATCAATACTTGCTCCAAACATGGTAGGAAACATCATAAATGGTGATATTACCATAAATCAACATGCGTTGTCTCACTCTACCTCGATAAACAAAGATGAAATTCTTCAGAATGTAAAGAATAAGATGAAAACAAGAATGCTGAGTGACTCTGAGAGGATTTTGGAGGGAAGTGCACCACGGTCGGTCTCTCTAAACAAGATCTACACTAAACTGTTTATAATCGATGACGAGTCTGACCCCATCAATAGAGAACATGAGATCTGGCAGATCGAGATGACGCATGATTTAAACACAGCAGCGCAGACAGTCATAAACTACAATGAAATCCTTCAACCGTCCACAGATGAAAATAGAAAAATGATGACTGTTTTAACTAAAGGAATTGCCGGAATTGGGAAAACAATCACCGTGCAGAAGTTTGTCCTCGACTGGACGAGCGAAAAAGCCAATCAAGATCTAGAGCTTGTGTTTCTGCTCCCCTTTCGAGAGCTGAACTTGATTGAGGGAGAAAAGAGTCTTTTTGACTTGCTTTGTGTCTTTTACCCCGAGTTTAAAGAGATGAGACCGATCTCTGATTGCATCTGTGATAGGAAAGTTCTGTTCATTTTAGATGGTCTGGATGAATATAAAAAGGATTTGAACTTTCAAAGCCGCCTTTTGTCAGATGTAACTGAGAAAGCCACAGTGGATGTCCTTCTAGTAAACCTTCTACAAAGAAAACTGCTTCCATCCGCTCATCTGTGGATCACCAGCCGGCCCGTCGCAGCTGGACAGCTTCCGAGGGAGATATTCTTACGTGGATACAAAACACAGATCAGAGGATTCAGAGAAGAGCAAAAGGAGGAGTATTTCATGAGGCAACTTGAGGATCCAGAGCTAACCAACGACATCATCTGTCATCTAAAGTCTCAAAAGAGCCTGTGGATATTGTGCCACATACCTCTATTTTGTTGGATTTCAGTGGTTGTTCTTAAAGACATAATTGCAAGTCAAATTAAAGATAGGAACATGCCCTCAAATCTGACAGAAATGTACATCCACTATCTGCTCATTCAGACCGGGTTGAGCCACAAGAAATATCAAGGGGAAGAACTGTCACAAGAAGATGCTCTCAAGAAGCATGATGAACTGATTATGAAACTGGCAGAGCTGGCATACTGGCAGCTGAAGAAACAGAATCCGATCTTCAGAGAAGAAGACTTGATGAACTATGATATCACTGTTGATGAAGCGCATCAATATCCTGGTGTCATTACCTGTGTCACAGAGGGCGACATTAGATATTACAGGAAAAAACTTTTCAGTTTCATCCATCTCAGTGTCCAGGAATTCTTTGCAGCCTTGTTTGCGTTTTACACATTTCTATCAGGTAATCAAGACTCCCTGAATTTAATTACAGCTAAAAAGAGGCAGCAGTCTAATTTGTGTGATTTTCTCAAAGATGTGATTGATGTGGCCTTGCAAAGTAAAAATGGACACTTGGATCTTTTTATGTGTTTTCTCTTTGGGATTTCTTGCGATTCCAGCAGAGATCTACTTGAAGGACTTCTGCCTCCATTATGGACCAGTAGTTTAGACAGTCACAAAAAGGTGACCACGTACATTAAGTCTTTGAAGAGGAAAGGTCTGTCCTCTGAGAGATGCATCAGTCTTGTTCGCTGTCTCGTTGAGCTCAAGGACACATCATTTTTGCAGGAGATGCAAGATCTTGAATGCTCACGGTCCAAAGAGCCTCTCACGCTGTTCCAGTGCTCATCTCTGGCTTTCCAGTTTAGGATGTCAGATATGAAACATGATAAGTTTGACCTCAGGAAATACAACATCACTTTAGAAGGGTTTCAGAGATTTTCTCCAGCCATCATGTGCTTCAGAAAGGCATTGCTCAAAGGAAGCGGATTTACAGAGCAGCACTGTAAGAGCCTGACGAGTTACCTGAAGTCACCAAACTCTCACCTGACTGATCTTGATCTGAGCCACAATGCTCTGGGAGGGTCAGCGCTGAAGCATCTTTCCACTGCGCTCTGTGATCCCAACTGCCAGATTCAGATCCTGAATCTCAGCCACAATGACCTCCAGAGTCAGGACATGGAGCTGATCAGGGATGTGCTTTCAGGAGAAAATATGAATCTGAGAGTGCTGAATCTCAGTGACAATCCTCTAGGTGATTCAGGAGTGAAGATTCTCTCAGCTGGACTGCAGAGCACAAACTGTCATCTTGAAGTTCTGAAACTTTCAGGCTGTCAAATTAAAGAAGGAGTTTATCAGTTGCTGTCGTCTTTGAAAGCCAATCCTTCATGTCTGAGAGAGCTGGATCTGCGGTATAATGATCTTGGAAACATCGGACAGGAAATTCTTAAGGATGAGTACCTGTGCTCACTGAGAATTTCTACTGGAGGAGTCTGTGGTCCCCAACCAGGACTCTACAAATATGCTGCTGTCACGCTCACCTTTGACCCTCAGACGGCTAACGAATACCTCCATCTGAATGAGAACAACACTGTGGCCACTCGTCAGAAGGAGAAACAACAGCTTCCTGATAATGACGAGAGATTTGTCATGTGCAACCAGGTCCTGTGCCGCCCGCCGCTGTCAGAACGCTGCTTCTTTGAGGTGGATGTGATTGGGCCAGACATACATGTGGGCGTGGCCTGTGAGGGAATGGAGAGGAAGGGAGCGAGTGATCGAGTACGACTGGGTCGCAATGAGATGTCGTGGAGTTTATGTTGCTCAGATAATGTATGTGTGGCTCAACACAACCAGAAAACCGTATCAGTTCAAACAGAGTCCATCAGGAAAGTCGGCGTGTTCCTGGACCGGAAGGCTGGAACAGTTAAGATCTCAGTTAAGATGTTTATGGCACATGATTCAGTGGTACTAAAATATGCAGTGGAGCTGAGCTCATTTTTAAACTCTCAGATGATCTTTATGATTCAAACCTTCGAAACGAGTCAAATCTACACGGATGCTGTATAACAAATACATGCGATTTGAAAATTTGAGAACATTTTGAGACAATTAAA
>TU494062
CGACACATGCCGTTGTAGCGCTTTTGCATTTTAAATTTAAGCGGTTACAGACAAACAAACAAAAGTGCAGTGATGGAGCGCATGAACATGATTAATTATATCAGTGATCTGAATGAGAAGACTCGCTCTTTATTAATGACGAAACTCAACAAGCACTTGAGCAGGAGAAGAACAACAACAGGGAGTTTGGAAGACACCCTAAAGAGCCTACAGGATATTTATGGAGAGAAAAGAGCATTAAAAAAGGTCAAGTCCATAGTGAAAAAAATCAGAAAACAAATGGATATCAAAAATGGTGGCAGTGTTCAAACACATTCTGGAAACAACCTTCCACAACAACAGCATAATAATAATAATAATTCTACATTACTCGGGCAACCATCGATTCAGAACCCAAATAACATTACAATTCACCAGAAGGATGGTGGATCAATACTTGCTCCAAACATGGTAGGAAACATCATAAATGGTGATATTACCATAAATCAACATGCGTTGTCTCACTCTACCTCGATAAACAAAGATGAAATTCTTCAGAATGTAAAGAATAAGATGAAAACAAGAATGCTGAGTGACTCTGAGAGGATTTTGGAGGGAAGTGCACCACGGTCGGTCTCTCTAAACAAGATCTACACTAAACTGTTTATAATCGATGACGAGTCTGACCCCATCAATAGAGAACATGAGATCTGGCAGATCGAGATGACGCATGATTTAAACACAGCAGCGCAGACAGTCATAAACTACAATGAAATCCTTCAACCGTCCACAGATGAAAATAGAAAAATGATGACTGTTTTAACTAAAGGAATTGCC
>TU494061
CATATATATATATTTATGAATGTGTATTTGTTTGTTTTTTCCACCTCAGTTGTCTCACTCTACCTCGATAAACAAAGATGAAATTCTTCAGAATGTAAAGAATAAGATGAAAACAAGAATGCTGAGTGACTCTGAGAGGATTTTGGAGGGAAGTGCACCACGGTCGGTCTCTCTAAACAAGATCTACACTAAACTGTTTATAATCGATGACGAGTCTGACCCCATCAATAGAGAACATGAGATCTGGCAGATCGAGATGACGCATGATTTAAACACAGCAGCGCAGACAGTCATAAACTACAATGAAATCCTTCAACCGTCCACAGATGAAAATAGAAAAATGATGACTGTTTTAACTAAAGGAATTGCC

Function

NR:

description
hypothetical protein cypCar_00037787, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_00235686_00242814.mRNA False 3616 mRNA 0.42 11 235447 242861
TU494062 False 816 TUCP 0.38 5 235614 237369
TU494061 True 370 TUCP 0.37 2 236911 237369

Neighbor

gene id symbol gene type direction distance location
CI01000306_00135679_00139917 NA coding upstream 94993 135500 ~ 140454 (+)
CI01000306_00107710_00118177 NA coding upstream 116487 106737 ~ 118960 (+)
CI01000306_00044391_00064128 NA coding upstream 171295 43677 ~ 64152 (+)
CI01000306_00245734_00262949 LOXL4 coding downstream 2280 245141 ~ 263251 (+)
CI01000306_00279658_00285330 ERO1B coding downstream 36797 279658 ~ 285494 (+)
CI01000306_00285981_00288513 NA coding downstream 42968 285829 ~ 288715 (+)
CI01000306_00297906_00319127 NA coding downstream 55045 297906 ~ 319419 (+)
CI01000306_00327727_00330881 NA coding downstream 84866 327727 ~ 330932 (+)
G430283 NA non-coding upstream 4352 230819 ~ 231095 (+)
G430272 NA non-coding upstream 5895 217887 ~ 229552 (+)
G430271 NA non-coding upstream 17605 217589 ~ 217842 (+)
G430270 NA non-coding upstream 21133 214061 ~ 214314 (+)
G430269 NA non-coding upstream 21802 213332 ~ 213645 (+)
G430207 NA non-coding downstream 24914 267775 ~ 337110 (+)
G430297 NA non-coding downstream 25381 268242 ~ 268866 (+)
CI01000306_00344942_00353683 NA non-coding downstream 110615 344547 ~ 354116 (+)
G430303 NA non-coding downstream 174947 417808 ~ 418042 (+)
G430067 NA non-coding downstream 206183 449044 ~ 483614 (+)
G430409 NA other downstream 682683 925544 ~ 999902 (+)
G430452 NA other downstream 907736 1150597 ~ 1150938 (+)
CI01000306_01209847_01210850 ACYP2 other downstream 966872 1209395 ~ 1211232 (+)
G430719 NA other downstream 1905521 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 2730295 2973156 ~ 2979157 (+)

Expression


Co-expression Network