CI01000306_00245734_00262949 (LOXL4)


Basic Information

Item Value
gene id CI01000306_00245734_00262949
gene name LOXL4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 245141 ~ 263251 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_00245734_00262949.mRNA
CTGTAAATGCGATGGTGACGCATCTCAGACCACTGAAATATGGCACACGCTGGACGATATTCTTCCTCAGAATTGTATCCCAGTACAAACATCTGAACATTCTTAAATCAAGATTTTCTTGAGAAGCTTCTCTGATTTTTGATATTAGGTCTTGTTTTCTGATAAACTCATCAAAATGAAGTGAGTTTATGCTTAAATAAACAAATATCTGGGATCAGAAAAATCATCAAGGAAAACAAGATTCTTTCTGACCTCACTAACAGATATTTGTTGTTTTAAGCATAAACTCATTTGAAGTCATTTTGCTTCTCAAGTAAATATATCTTGATTTAAGGATGTTTAGATATTTGTGCTGGAAAACAAGACAGAAACACTGAGGAAGAACATCATTTTTCCAGTGTTGGAAACAGGCTCCAGTTCAGATCCCCAGTGGACCTGCATTCTACACTTCTGCTTGAACTCTGGTTAATTTGAACTTCTCTGCTCTGTGCTTTGGTTTAATTGCTGCTGGCAGGAGTCATTAGCTCAAGTCTCATGCTTGAGAAGCTTCGTTTATCTGCAGTGTAATGCCAACTCATCCGCAGGGATCAGAGATGATCTTCCAGCTGCTGCTCCTGAGTGTTATCGCTCCGCTTTTGCTCGCCGCTCCGGGAGTCCAGGTGCGTCTGGTGGGCGGCAGGAGCAAGTTCGAGGGTCGCGTGGAGGTGTTTTATAATGGAGAGTGGGGCACCGTGTGTGACGACGAGGTCAACATCAATCTTGCCAATGTCGTGTGTCGCGAACTGGGCTTTTCTCGTGGACTCACCTGGGCTCACAGCGCAAAGTTCGGCCAGGGTCGCGGTCCGATCTGGCTGGATAACGTCTTGTGTTCGGGCACCGAGAGCTCACTATCGGACTGCCGATCCAACGGTTGGGGTGTGAGCGACTGTACTCATGCTGAAGATCTAGGTGTCATTTGCAGTCCAGACCGACCCAACCAGGGTCACGTCCCACGTTACCAAGAATCAAGCCAACCTTCTTCACCTCAGACCTCCAACCTCCTCTCAAACCCTCCTCCAGCCGCCTATCCACCGGCCAGCTTGCCCCGCCAGCGCGGACACGAGATCGCCCTCCACCGCAGCAGCCAGGGCCCGTCCTCGCCGCAGCTCCACGGCCACCGCATACAGCTGCGCAGGAACGGATACGAAAGCACCGCCACCACCAGCGGCCTGCCGAGGGGTCACCAGCTGCCGGACTTCCTGCGCAGCAGGGCCACGTACAGAAGGGCACAGGACGTGACGCCCAGTCAGACCACCAGACGCCCTGAGAGACCACCAGCACCTGAGCCGTCCACTGCATCGGTCCGGCTGGAGGAAGTGCGTCTCCGACCCGTTCTGGCCGCCACACGAAACTCTGCCATGTTAACAGAGGGCGTAGTGGAGGTGAGGCATGCTGGGAAATGGAGGCAGGTGTGCAATTTGGGCTGGGACCAGAGCAGCAGTCGGGTGGTGTGTGGCATGCTGGGATTCCCTTCAGCAGGACAGCTTGACACACGTGTGTATCGGAAACTGTGGGACTCCAAGATGGAGGATCCAGCCACAAGGTCTGCGGTCAGTAAGAAGGGATTCTGGGTCGAGAGGGTTCAGTGTTCGGGCACGGAGGTTTCACTGGCGCAGTGTCAGGCGCAGCTGTCCTTCCCGCGGAACGACGTTCCCTGCAGTGGAGGGATGCATGCGGTGGTGCGCTGCGTTCCTGGCGCTCAGTTCTCCAGAATCTCCACCTCCGGACACCCACAGGCTCCGCCCCCTCTGAACACGGTGGCGCGGCTGAAGGCGGGCCCGCGGCTGGGCGAGGGTCGGGTGGAGGTGCTCCGCGAGGGAAAGTGGGGAACCGTGTGTGACCATCTGTGGGATCTGTCAGCGGCCAGCGTGGTGTGCAGAGAGCTGGGCTTCGGCTCGGCCCGAGAGGCCCTGCGAGGAGCACTCATGGGTCAAGTGATGAGGAGAATAAGAGACGTGTTCGCTGGTGACATCATAACCCAACCGGGCACAAATTACAGAGTCTCGTCCGTACACACGCGTCTCTCGTCCTGCAGCTATTTCCATCTATTAAACACTTCCATTTGGCCCGTGCGTCTGGCGGGCGGGCGGGAGGCGGGCGAGGGCCGTGTGGAGGTGCTGATGGATCTGGACGGGCAGCAGCGCTGGGGCTCCGTCTGCAGTGAGAACTGGGGCATCAATGAGGCCATGGTGGTGTGCCGACAGCTCGGATTCGGATTCGCCTCCAGAGCCCATCAGGAGACGTGGTTCTGGCCGAGCAGCTCCGGGTCGGAGGACGTGGTTCTGAGTGGAACTCACTGCATCGGGACTGAGATCTCCATTCAGCAGTGCCGCAGGAACGGACATGTGTACTGCCCGCGCGGGGCCGGAGCCAAATCGGCCGGGGTCACCTGTGCGGACGTGGCTCCGGATCTGGTGATCGACGCGCAGCTGGTGCAGGAGTCTGCGTACCTGGAGGACCGGCCGCTGCACCTGCTCACCTGCGCACACGAGGAGAACTGCCTGTCGTCCTCCGCCGCCCGCATGAACTGGCCGTACGGACACCGACGCCTGCTGCGCTTCTCCTCACGCATCATGAACCTGGGCCGCGCCGACTTCAGACCGAGAGCCACCAAAGAGTCCTGGACCTGGCACCAGTGCCACAGACATTACCACAGTATTGAGGTCTTCACACACTATGACCTCTTGACCCTGAACGGCACGAAGGTCGCGGAGGGTCACAAAGCCAGTTTCTGTTTGGAGGACACATACTGCCCTGAAGGCCTGACCAAACGTTACGCCTGCTACAACATGGGCGATCAGGGCATCACTGTGGGCTGCTGGGATACGTACCGCCACGACATCGACTGCCAGTGGGTGGACGTCACCGACGTGGTGCCGGGGGACTATATCTTCCAGGGTGTTTCTGAGAAGCTCAGCCACGATTGTGGGCTTCATTTCAGGACGGTCACTCGTGGTCACCTAAAGACGATCCTCATGATTGCACAGTCATTTGAGAATCAGCAGAGTAATCTTTCCATTCCATCCGTGACTGAAATAACCCGCGTTTGTGTCTCGTGTGCGTCTTACATCAGTAGTTCCAGCAGAACTAAATTAAACCTTGATGAAGTGGAGGTGAACCCGTCTCTGGATATGGCCGAGTCCGACTTCCAGAACAACGTGATGCGCTGCCGCTGCCGCTACGACGGTGGACGCGTGTATCTGTACGGCTGCCACACGGGTGATGCGTACAGCGCAGAGATAGAGGACCTGTTTGAACACCAGCGTCAGATTTCAAACAACTTCCTGTGATGAATCCCGTGGAACGACAGGCTGAAATCCTCTCCTCTCGCCGGCGGAGGGTGGAGTCTGTGTGATTGATGGGGAGTGGGTGGGGCTAGTGTGATGATTGACGGGCAGGGGGCGTTTACAGTTCACTCAGTCACGTGTTCATTTCGGCCAGTATTGATGCTGTTGGTGAATCAGGAGAACTTTCTGCAGTTATAATGAAGGAGTTTGTGTGTGTTACAGATGTTACAGATGTTACGTGAGCGTGTTGATGAGTTTAATCTTCATCAGCCACTCGAGATTCATAGGAAGAAAAATGCCTCAAA

Function

symbol description
loxl4 Predicted to enable protein-lysine 6-oxidase activity. Predicted to be involved in collagen fibril organization and peptidyl-lysine oxidation. Predicted to be located in extracellular region and membrane. Predicted to be active in extracellular space. Orthologous to human LOXL4 (lysyl oxidase like 4).

NR:

description
lysyl oxidase-like protein, partial

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K00280 LOXL2_3_4; lysyl oxidase-like protein 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_00245734_00262949.mRNA True 3631 mRNA 0.56 15 245141 263251

Neighbor

gene id symbol gene type direction distance location
CI01000306_00235686_00242814 NA coding upstream 2280 235447 ~ 242861 (+)
CI01000306_00135679_00139917 NA coding upstream 104687 135500 ~ 140454 (+)
CI01000306_00107710_00118177 NA coding upstream 126181 106737 ~ 118960 (+)
CI01000306_00044391_00064128 NA coding upstream 180989 43677 ~ 64152 (+)
CI01000306_00279658_00285330 ERO1B coding downstream 16407 279658 ~ 285494 (+)
CI01000306_00285981_00288513 NA coding downstream 22578 285829 ~ 288715 (+)
CI01000306_00297906_00319127 NA coding downstream 34655 297906 ~ 319419 (+)
CI01000306_00327727_00330881 NA coding downstream 64476 327727 ~ 330932 (+)
CI01000306_00344942_00353683 NA coding downstream 81296 344547 ~ 354116 (+)
G430283 NA non-coding upstream 14046 230819 ~ 231095 (+)
G430272 NA non-coding upstream 15589 217887 ~ 229552 (+)
G430271 NA non-coding upstream 27299 217589 ~ 217842 (+)
G430270 NA non-coding upstream 30827 214061 ~ 214314 (+)
G430269 NA non-coding upstream 31496 213332 ~ 213645 (+)
G430207 NA non-coding downstream 4524 267775 ~ 337110 (+)
G430297 NA non-coding downstream 4991 268242 ~ 268866 (+)
G430303 NA non-coding downstream 154557 417808 ~ 418042 (+)
G430067 NA non-coding downstream 185793 449044 ~ 483614 (+)
G430409 NA other downstream 662293 925544 ~ 999902 (+)
G430452 NA other downstream 887346 1150597 ~ 1150938 (+)
CI01000306_01209847_01210850 ACYP2 other downstream 946482 1209395 ~ 1211232 (+)
G430719 NA other downstream 1885131 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 2709905 2973156 ~ 2979157 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004386 LOXL4 coding NC_007122.7 CM002895.2 44340212 ~ 44347587 (-)
bowfin (Amia calva) AMCG00003059 NA coding CM030139.1 CM030139.1 10624960 ~ 10647910 (-)