CI01000306_00367856_00370281 (IRF2BP2B, I2B2A)


Basic Information

Item Value
gene id CI01000306_00367856_00370281
gene name IRF2BP2B, I2B2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 366422 ~ 371450 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_00367856_00370281.mRNA
GTATAAATGCATGAAAGAATTTGGAAAGGCAGAACCACGTGGTCTAGACTCGTTGTCCTCGCTATGGGACTTTCCATAATTTTGCCAGGCATCATGAATCACATGCTCTTGGCAGGCATGAATCAGGCTCTGAGGTTGAACGAAGTCCAGTGCGGATGAATAATCTACCAGAGCAGATATTCCAGACACACCAGTGCGCTACTGCTGAAATTATTAAATAAATCAGCAAAAACTCCCTCAAAAACGGCTGTAATCTCTCTAAACTGCGTCTCGTTGCAGCGGTTGTGCTGCTTTATGTATCTGAGGTTATGGAAGAGTTAAAGGGATGCAGTGGCGCATGACGTTGCGTTGGCAGGAGCGCTGGAATGTGGAACTGTGAGGGTTCTAAGATCACATTTACTCACAGCGATCAGTTGTGCATTTAAAACAGTTTTTGAGCAGCTACCATTGCACTCGATCTGTAATTGGGTCATTCCTGTACTGCAGAACCCTATGAACTCTACATAGGGTTTAAAAAAATCAATAAAACGTGATTATTTACACAATGACAAGAAAATGAACATGAAGAGCTAAGGTTAGACATTGCTCACTTGAGGGATTGGCAGTTAGATTACATGAGGGTCAACTTAATGATAATTTTTAACCATTTCTTTTTCCTTTTTTGAGTGACAAACTAACTAATACCATAAAACATGACATAATGCAAATATTTACTGATGTTTGTGCGGTTATTTCCCTCACAACGTTTTCATAACTTAACGGGAACGTTAGTAAAACATTCTTAAAACATTTAAGTTAGCTAAGATAGTGACCACAAAGAAAAAAACTATAAAATGATTACGAAACTATTCAAATTCTGTTTGCTCAATAATTTCCGTCTTTAAAACGTGTAAATTCAACATTTATTCGAAAATATTAAGATGTGTATGATGGGCACATGGAAATGGTAAATACTGAAATGTAGAAAACATATTCGATCATTCCGTCAGAGAAAAAATGTACTATACTTTAATAATCTATCGTCCTAATTACATTTATACCCTTCGCATAGCAAACCTCCGTCGTGAATACGCACTTTTTGACATGTCGTCCACCTTTTTGTCGATGTTTTTGATCGCTCTTTGACACCCTCAAATACGCTCTCATTCAGCGCGCCGTTCTGTGAGGAGGGAGCGCAGCGCGCATGCGCAGAACGAGTTGTCGAAGAATCAAGTAAATAGAAGCAGCGCGGTGACGTCACCGCTCCCACACTGAGAGCTCGCGGGCTGGAGCGCACACTGCCATGAACTTCGGAGCGTAACTTCAACGTTTTTCTCGCTTTTCGGACGGGGTGGGAAACTACAACGAGATATATTCTTATTTTTTTCCTCATAAGAACGAGCAACATTTGGAGAATTTAGTTGCATATTTTGCTTTTCCCCCGTTTTCAGCAGCATGTCGTCTGCGGCGGTCGCTGCCTCGCGCAGGCAGTCGTGTTATTTGTGCGATCTGCCCCGCATGCCGTGGGCGATGATCTGGGATTTTACCGAGCCCGTGTGCCGCGGATGCGTCAACTACGAGGGAGCGGACCGGATCGAGTTTGTGATCGAAACTGCGCGGCAGCTGAAGCGCGCTCACGGCTTCCAGGAGGGCAGATCACCGGGACCGGTGGGCAAACCGGGGAAGGACATCCAGCCCATCAACCACACGGAACCGGGCTCGCGCCCTCCGCAGCCGCTGGATCGGTACCCCCTCGCGTCGGACAGACCTCCCAGACTGGGTCCGGAGTACCAGCCGGGACGGCAGGCGAACGGGATCCCGGTGCCAAATGGGTTCCCGAAGCCCGACGAGCCCCCGGAGCTGAACCGTCAGAGCCCGAACCCGCGTCGGACTGGCGCCGTGCCGCCCAGCCTGGTGCCTCTGGTAAACGGGACCATCCCGCCAGTGCACGCGCTTAACGGGAGATCCGTGCAGATGGGGATCCCACCGGAGCATGTGGGCAAGCGCGCGGACGACATGAAGGACAAGCACCGCGCCGACAGCATGAGCGACCCGAGCGACGGACACAAGCGAGTGGAGGACTGGACGCAGAAGGGCAAGACGGTCCGGGACCTGATGGCGCTGCAGAGCCTCGACTCCCGGTTCAAGAAGGAGCACGCAGCGCTGCAGCACAGGATGGGATACGAGAGCAGCTCCAGTGCCTTAAAAACAGACCGCGGTAAGCACTCTCGGGGCATTAAGAGGAAACCCTCTCCTGAGCCGGACGGGGAGGGCACCGCCGCCAAGCTCAACGGTGAGGGTCCGCCGTGGCTGCCGTCTCCATCCGAGGTGCTTAAGATGCCCTCCGCGGCCCTGCCGGGATTCGCAGCCGCTCCGCCTTCGACGATCTCCCCGCATTCGCGCACTACTCCGCCAGAGGCGGCCACAGCCGCACAGAACGGCCAGTCGCCGATGGCCGCGCTCATCCTGGCCGCGGACAACGCCGGCACCGGCTCGCCTAAAGATGGCGGCAACCAGGTGCACTCCACGACCACAGCGGCCGCGGGCCGGCGAAACAGCGGAAGCCCCCAGTCGCCCTCCGCCGGACAGAGACGGCTCACACTGGGCACGGCGACCGCGCACGTCCCGGGCATGGACCCGCAGGCCGGGCACCCGCAGAGCATTCCGGATTCCTCGGTGCCGCCCGGCAGCGTGCCGTTGTGCTGCACCCTGTGCCACGAGCGCCTCGAGGACACACATTTCGTCCAGTGCCCGTCCGTGCCGTCGCACAAGTTCTGTTTCCCGTGTTCCCGCGAGAGCATCAAACAGCAGGGGGCGACGGGAGAGGTTTACTGCCCTAGCGGGGAGAAATGCCCACTGGTCGGTTCCAACGTGCCCTGGGCGTTCATGCAGGGCGAGATTGCCACCATTTTGGCTGGGGACGTAAAGGTGAAAAAGGAGCGGGACCCTTGATTTTGTTTTTGACAGTTTCAACACCAATCATATTGCATACCATCCAAACGCGAACTAACGGACATGTACATATGAACTTAAGGGAACTTGGTAAACATGGCTGTATAATTTTTTTGACTTTCCCTTTTTTTGAATACATTGTGTTTCTATATTTTTTGGAAGATAAAATGGTATGTACGCACTATAACAGACTCCCTTTCCCCCATTCAGTGGTTGTTCAGAGCGAGCGCTCGGTGTACTAGTAGAACTGGTGGCAGTCCATGTTTAAACACAGAATGTGACTAATACTCTTTAAGCACTTGGCAAAAACTGAAACGCTTTTAGCTGTATCGTATGCACTTGTTTAAAAATTGCCAAATACAATTTCTGACCTTGTAATAACAATCTGACGTGTCTGTGGTTGGCTTATTGTCTGCCCTCGCTGGATGATGCAACGACCTCAACGAGTGCGAAAAGGGAACTAAAAAGGCTGATTTTGTCTTGGTTCATTCTGGGAGTTCATTGCCTCCATATTGGTAACTGATATCACAACAATTTGCAAAGCTAAGGTAGCTAAGGTAAGAATGCTTGAATTTGGAAGAGTATCTCTGTTTTTTCCTCCTAATACGCAAGCCGTGACTTGTATCGCACATTGTTTTCCGCCTCCATGTGGAGTAACCTGATGCCGCGTGCAAGCCGACACTCCGCGTCTATTTTTATTCACATGCTGCCAGTTAGGAGCTCGTAAATGATCTGTCCTTTGGCCTTTTTTGGTGGATAAAGACCCGCGACGTTAAACATTTCGGCTGCGTTAGGATGACATGCTCTCAAGGTGCAGATTGGAAAAGAAAACAGTAACACTTTACAATAAGATCCCATTAGTTAATGCATTACAATCAGCAATATGTTTGCTACACTATTGATTAAAATTTAAAAGATACAACTTTTGATAAATGTTGACTAAGATTAATGCATGCTTTAGTTCATGTTAAAGAGTTTCAGGAATACGGAGAAACACTTGATCTCATTTTTTTCCAGTCTTGCACTAATCGGCTTTTGTTAGATTTAACAGGAACAATCAAACTGAACTGTTCAAATTCATTAATTACTGTGTAGGCTCAAAGCATCAACCCACATCGAGCGCTGGCCATCTGACTATATTATTGGAGCTGCGCTGTAGCATATGCTTA

Function

symbol description
irf2bp2b Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of macrophage differentiation. Predicted to be active in nucleus. Is expressed in several structures, including immature eye; musculature system; nervous system; notochord; and pronephric duct. Human ortholog(s) of this gene implicated in common variable immunodeficiency. Orthologous to human IRF2BP2 (interferon regulatory factor 2 binding protein 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_00367856_00370281.mRNA True 4100 mRNA 0.50 2 366422 371450

Neighbor

gene id symbol gene type direction distance location
CI01000306_00344942_00353683 NA coding upstream 12306 344547 ~ 354116 (+)
CI01000306_00327727_00330881 NA coding upstream 35490 327727 ~ 330932 (+)
CI01000306_00297906_00319127 NA coding upstream 47003 297906 ~ 319419 (+)
CI01000306_00285981_00288513 NA coding upstream 77707 285829 ~ 288715 (+)
CI01000306_00279658_00285330 ERO1B coding upstream 80928 279658 ~ 285494 (+)
CI01000306_00384380_00391350 NA coding downstream 12580 384030 ~ 392256 (+)
CI01000306_00399584_00413590 NA coding downstream 28083 399533 ~ 414128 (+)
CI01000306_00424179_00424623 NA coding downstream 52326 423776 ~ 424798 (+)
CI01000306_00442430_00460709 NA coding downstream 70980 442430 ~ 461183 (+)
CI01000306_00496203_00497820 CUNH21ORF2 coding downstream 124753 496203 ~ 498460 (+)
G430207 NA non-coding upstream 29312 267775 ~ 337110 (+)
G430297 NA non-coding upstream 97556 268242 ~ 268866 (+)
G430283 NA non-coding upstream 135327 230819 ~ 231095 (+)
G430272 NA non-coding upstream 136870 217887 ~ 229552 (+)
G430303 NA non-coding downstream 46358 417808 ~ 418042 (+)
G430067 NA non-coding downstream 77594 449044 ~ 483614 (+)
G430309 NA non-coding downstream 135982 507432 ~ 507773 (+)
G430310 NA non-coding downstream 152613 524063 ~ 524288 (+)
G430311 NA non-coding downstream 153677 525127 ~ 525334 (+)
CI01000306_00235686_00242814 NA other upstream 129053 235447 ~ 242861 (+)
G430409 NA other downstream 554094 925544 ~ 999902 (+)
G430452 NA other downstream 779147 1150597 ~ 1150938 (+)
CI01000306_01209847_01210850 ACYP2 other downstream 838283 1209395 ~ 1211232 (+)
G430719 NA other downstream 1776932 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 2601706 2973156 ~ 2979157 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003744 irf2bp2b coding NC_007122.7 CM002895.2 44723019 ~ 44726288 (+)