CI01000306_00466878_00474566


Basic Information

Item Value
gene id CI01000306_00466878_00474566
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 466713 ~ 474566 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_00466878_00474566.mRNA
GATTGGTCGATCGGGTCGTTATGGCAGGAAGGGTGTGGCCATCAACTTTGTGAAGAACGACGACATCCGTATCCTCCGTGATATTGAGCAGTACTATTCCACACAGATCGATGAGATGCCCATGAACGGAATCAGTATGTCTGTGCAAAACCCGCTTCAGGTGGTGAACATCCCCTGGAGGAACAACAACTTCAGCCTGATGAGCCGCGACCCGCCGCTGTCCGACCAGGGAGAGACGATCATCGGCGTGTACCTGCTCGTTCTGGGTCAGGCTGTTACTTCAGTTTACTTCTCTTCATCGTTTTTACCTCTCTTTCACATTATCAGCAACTTTAGATCAGTGAAGCGGAGATCTTCTCTCCAGCCCACCGACTATCTGACGCTCAATCTCGCCATCTCCGACGCCAGCATCTCCGTGTTCGGATATTCCCGAGGAATCCTCGAGATCTTCAATGTGTTCAAGGATAATGGATACCTCATCACATCTGTGTGGACGTGCCAGGTGGACGGTTTCTTCACGCTGGTTTTCGGTCTCGGCAGCATCAACACGCTCACCGTCATCAGCATCACCAGATACATCAAGGGATGCCATCCGACTCACTGTATCACCAACACCACAGTGATGATGTGCATTATTTTCATCTGGCTCGGATCCTTGTTCTGGTCCGGCGCTCCCATCCTGGGCTGGGGAAGCTACACAGATCGAGGATACGGCACCTGTGAGATCGACTGGGTCAAAGCCAATTATTCCACCATCCACAAGTCCTACATCATCTCCATCCTCATCTTCTGCTTCTTCGTCCCTGTGCTGATCATGCTGTTCTCCTACGTGTCCATTATAAACACGGTGAAGCGAGGCAATGCCATGTCAGCGGAGGGCGACCTGACCGACAGACAGCGCAAGATCGAGAGAGATGTCACTATCGTGTCCATTGTGATTTGCACGGCGTTCATCCTGGCCTGGTCTCCGTACGCCGTGGTGTCCATGTGGTCGGCGTGGGGTTTCCACGTGCCGAGTCTCACCAGCATCTTCACGCGACTCTTCGCCAAGTCCGCAAGCTTCTACAACCCGCTCATCTACTTCGGCCTGAGCTCCAAGTTCCGCAAAGACGTGAGCGTGTTGCTGCCCTGCAGCGGCGACGGAAAAGACACCGTCAAACTGAAACGCTTCAAAAAGATCAAGGGGAAGGCGGACGGCGCGTCACCCGGAGCCCCGCGCCAGCGCTTCAGGCCCTGCGGCGAGGAGAACCGCGACTTACAAAAGATCGAGAAAAAGTACCATCCAGGGATAGAGCCGGCAAACCCCGCCCCCAGCCCGGACTCAGGGGTGGGCAGTCGTCCCGAGACTCCGCCCCCTGCCATTAAACAGGTGTTCTCCATCGACGTGCCCGAGCCGTCAGACACGACCGAGTCTGAATGCGTCAGACTGTAGATCAGGCGTGATCACGACCATTTTTCTGTTTTTGATTTTTATATATGAGCGACTTATGAAATTTTATGTTAATGATGTAAGCAGCATGAAAAGCTATTTTTGTAAATGATGGATGTAAATGTGAAATATTGTTTTTTAACAACTGTGTACATCAGCATTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_00466878_00474566.mRNA True 1597 mRNA 0.52 7 466713 474566

Neighbor

gene id symbol gene type direction distance location
CI01000306_00421158_00422795 NA coding downstream 43459 421016 ~ 423254 (-)
CI01000306_00373354_00379937 NA coding downstream 86536 373283 ~ 380177 (-)
CI01000306_00331605_00336103 TOMM20 coding downstream 130610 331329 ~ 336103 (-)
CI01000306_00321852_00325373 NA coding downstream 141340 321539 ~ 325373 (-)
CI01000306_00291753_00295570 GPR137B coding downstream 171143 291344 ~ 295570 (-)
CI01000306_00474870_00478789 BRAFLDRAFT_123431, GM5580, IF4A3, GM8994, EIF4A3.L, EIF4A3 coding upstream 198 474764 ~ 478915 (-)
CI01000306_00482506_00494090 PFKLB, PFKL coding upstream 7916 482482 ~ 494090 (-)
CI01000306_00498705_00504548 ORC2 coding upstream 23918 498484 ~ 504548 (-)
CI01000306_00509647_00514228 LDB1B, LDB1, XLDB1, LDB1.L coding upstream 34728 509294 ~ 514228 (-)
CI01000306_00554763_00557805 CANT1B, CANT1 coding upstream 79873 554439 ~ 558193 (-)
G431556 NA non-coding downstream 48671 417797 ~ 418042 (-)
G431551 NA non-coding downstream 55998 410428 ~ 410715 (-)
G431550 NA non-coding downstream 56991 409457 ~ 409722 (-)
G431546 NA non-coding downstream 63154 403217 ~ 403559 (-)
G431505 NA non-coding downstream 281143 184011 ~ 185570 (-)
G431568 NA non-coding upstream 46394 520960 ~ 521551 (-)
G431475 NA non-coding upstream 185478 660044 ~ 661145 (-)
G431576 NA non-coding upstream 225353 699919 ~ 700243 (-)
G431486 NA non-coding upstream 238341 712907 ~ 714529 (-)
G431618 NA non-coding upstream 309401 783967 ~ 785240 (-)
G431706 NA other upstream 688461 1163027 ~ 1163338 (-)
G431814 NA other upstream 837136 1311702 ~ 1312434 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other upstream 1243367 1717933 ~ 1726043 (-)
G432022 NA other upstream 2525670 3000236 ~ 3003891 (-)
CI01000306_04544349_04545034 NA other upstream 4068157 4542723 ~ 4545244 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004402 opn6a coding NC_007122.7 CM002895.2 44858979 ~ 44876005 (-)
bowfin (Amia calva) AMCG00001609 NA coding CM030143.1 CM030143.1 8671010 ~ 8686429 (-)