CI01000306_00474870_00478789 (BRAFLDRAFT_123431, GM5580, IF4A3, GM8994, EIF4A3.L, EIF4A3)


Basic Information

Item Value
gene id CI01000306_00474870_00478789
gene name BRAFLDRAFT_123431, GM5580, IF4A3, GM8994, EIF4A3.L, EIF4A3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 474764 ~ 478915 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_00474870_00478789.mRNA
ACCGCGCGTCTCGTGCATTGTGCGTCACAGCTGCGACACACGCGGCTCTTCCGTTCGGCCTGTGTACGCGCACAGACGCGCTTTCATATTTTTACTCGTTATTTATATTAAAAATCAATCATAATTATGGCCGCCGCCGCAGCTCCCGTGAGGAAGAGGATCCTGAAGGAGGAAGACATGACGAAAATCGAGTTTGAGACGAGTGAAGAGGTCGATGTGACGCCGACGTTTGACACGATGGGCCTGAGGGAAGATTTACTGCGCGGGATCTACGCGTACGGGTTTGAGAAGCCATCAGCCATCCAGCAGAGAGCCATCAAACAGATCATCAAGGGAAGAGACGTCATCGCCCAGTCTCAGTCTGGAACCGGTAAAACAGCCACGTTCTGTATCTCAGTGCTGCAGTGTTTGGATATACAGGTTCGAGAGACTCAAGCACTGATTTTGGCTCCGACCAGAGAGTTAGCAGGACAGATCCAGAAGGTGCTCCTGGCGTTGGGTGACTACATGAACGTTCAGTGTCACGCCTGTATCGGAGGCACAAACGTGGGAGAAGACATCAGGAAGCTGGACTACGGGCAGCATGTGGTGGCAGGAACGCCCGGCCGCGTGTTCGACATGATCCGCAGGAGGAGTTTGAGGACTCGTGCCATTAAGATGCTGGTGTTGGATGAAGCGGATGAAATGCTCAACAAGGGTTTTAAGGAACAGATTTACGACGTGTACCGATACCTGCCGCCCGCCACTCAGGTGTGTCTGATCAGCGCCACGCTGCCACACGAGATCCTGGAGATGACCAACAAGTTCATGACCGACCCCATCCGCATTCTGGTCAAACGTGATGAATTGACACTGGAGGGGATCAAGCAGTTTTTCGTGGCCGTCGAGCGAGAGGAGTGGAAGTTTGACACACTGTGTGACCTGTATGACACGCTGACCATCACGCAGGCCGTCATCTTCTGCAACACCAAACGCAAGGTGGACTGGCTGACAGAGAAGATGAGGGAGGCGAACTTCACCGTGTCGTCGATGCATGGAGACATGCCACAGAAAGAGCGAGAGTCCATCATGAAGGAGTTCAGATCTGGAGCCAGTCGAGTGTTGATCTCCACAGACGTTTGGGCCAGAGGTCTGGATGTTCCTCAGGTTTCTCTCATCATTAACTACGATCTTCCCAACAACAGAGAGCTGTACATCCACAGGTACGGACACAGATCTCGGTCTCAGGAATGAATGAATGAACTCGTTCGCTGTAGACACATTTGAGTACAAACATCTAGAGCAGGGTTACTAAAGTTGACTAAAACTAAAGCATTTGTTACTCAAAATAAGATATAAA

Function

symbol description
eif4a3 Predicted to enable RNA helicase activity and mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA metabolic process; mRNA transport; and regulation of translation. Predicted to be located in nucleus. Predicted to be part of U2-type catalytic step 1 spliceosome and catalytic step 2 spliceosome. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in intellectual disability. Orthologous to human EIF4A3 (eukaryotic translation initiation factor 4A3).

GO:

id name namespace
GO:0035145 exon-exon junction complex cellular_component

KEGG:

id description
K13025 EIF4A3, FAL1; ATP-dependent RNA helicase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_00474870_00478789.mRNA True 1339 mRNA 0.51 10 474764 478915

Neighbor

gene id symbol gene type direction distance location
CI01000306_00466878_00474566 NA coding downstream 198 466713 ~ 474566 (-)
CI01000306_00421158_00422795 NA coding downstream 51510 421016 ~ 423254 (-)
CI01000306_00373354_00379937 NA coding downstream 94587 373283 ~ 380177 (-)
CI01000306_00331605_00336103 TOMM20 coding downstream 138661 331329 ~ 336103 (-)
CI01000306_00321852_00325373 NA coding downstream 149391 321539 ~ 325373 (-)
CI01000306_00482506_00494090 PFKLB, PFKL coding upstream 3567 482482 ~ 494090 (-)
CI01000306_00498705_00504548 ORC2 coding upstream 19569 498484 ~ 504548 (-)
CI01000306_00509647_00514228 LDB1B, LDB1, XLDB1, LDB1.L coding upstream 30379 509294 ~ 514228 (-)
CI01000306_00554763_00557805 CANT1B, CANT1 coding upstream 75524 554439 ~ 558193 (-)
CI01000306_00563449_00566897 NA coding upstream 84015 562930 ~ 566897 (-)
G431556 NA non-coding downstream 56722 417797 ~ 418042 (-)
G431551 NA non-coding downstream 64049 410428 ~ 410715 (-)
G431550 NA non-coding downstream 65042 409457 ~ 409722 (-)
G431546 NA non-coding downstream 71205 403217 ~ 403559 (-)
G431505 NA non-coding downstream 289194 184011 ~ 185570 (-)
G431568 NA non-coding upstream 42045 520960 ~ 521551 (-)
G431475 NA non-coding upstream 181129 660044 ~ 661145 (-)
G431576 NA non-coding upstream 221004 699919 ~ 700243 (-)
G431486 NA non-coding upstream 233992 712907 ~ 714529 (-)
G431618 NA non-coding upstream 305052 783967 ~ 785240 (-)
G431706 NA other upstream 684112 1163027 ~ 1163338 (-)
G431814 NA other upstream 832787 1311702 ~ 1312434 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other upstream 1239018 1717933 ~ 1726043 (-)
G432022 NA other upstream 2521321 3000236 ~ 3003891 (-)
CI01000306_04544349_04545034 NA other upstream 4063808 4542723 ~ 4545244 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00001437 eif4a3,LOC107702040 coding CM030143.1 CM030143.1 3766101 ~ 3771735 (+)