CI01000306_00571360_00574170 (KITH, TK1)


Basic Information

Item Value
gene id CI01000306_00571360_00574170
gene name KITH, TK1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 571263 ~ 574535 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_00571360_00574170.mRNA
CTATAAATGGACAAACTGGCGGTGGCGGGATGTTCAAATCCTGCTGTAAGTCGTACTGTATGTTGAGATAGTCATAAAAACAGAAGAAACAAAAGACATGGATTGTTTGAATGTAGCCAAGATTTTACCCAATTCCCCACGGAAGACCAGAGGACAGATTCAGGTTATTTTCGGACCGATGTTCTCAGGAAAAAGCACTGAGCTGATGCGGCGTGTGCGGCGGTTCCAGGTGGCTCAGTATTCCTGCTTGGTCATCAAATATGCCAAAGACACTCGATATTCCCAGATGGGAATGGCCACGCATGACATGAGCATGATGGAGGCCGTTCCTGCCAACCGTCTGAGTGACGTGAAGTCTCTGGCCCTGCAGGCGTGTGTCATCGGCATCGACGAGGGACAGTTTTTTCCGGACACAGTTGAGTTCTGTGAAGAAATGGCCAACATGGGAAAAACTGTCATAGTAGCAGCGCTTGATGGAACCTTCCAGAGAAAGCCCTTTGGTAACATCCTGAATCTGGTGCCTCTAGCGGAGAGCGTGGTCAAGCTGAACGCCGTCTGCATGCAGTGCTTCAAAGAAGCCGCTTATACCAAAAGACTGGGAGCTGAAAAAGAGGTGGAGGTGATCGGCGGCGCTGATATGTATCACGCTGTGTGTCGGACGTGTTACGGAGGTCTTACGGAGTGTAAGGAGAACCGTGACCCGCTGAGAGAGGAGACGCCTCCGCACGTAACGTCAGGAAAACCTCTGGACCAAAGCGCTCCACGCAAACTCTTTGCTTCCCTTCACCTCTGAACACAACACGACAGTTAATGTATGGATTTACCTCTGTGTAGCGAGAGTTTAGCACTTGATGATGTTTATTTTTGTGCGTCTGATGTGCTGTTGATTTCCTGTAAATAACTTTAAAGTGGGTCCAGCAAAATGTGTGTTTGTATCTTTGGTTTGAAAATCAGTACTTTGTACGTATTTTAATTTAAATGATTTTAAACTATTTAAATGTGTCTAACAAAGCCAGCTGACATCCTGAAACACTGCCATGGAGTGATGCATTATGATTAAAACTTTTTTTTTTTTTCTTTTTTTTCTGTATGTTTTTCACATGAAACATTTTGTAGAATTTGCTACATGAGAAGTTTGTTTTAATTCAATGCGTGAAA

Function

symbol description
tk1 Predicted to enable thymidine kinase activity. Predicted to be involved in thymidine metabolic process. Predicted to act upstream of or within DNA biosynthetic process and phosphorylation. Is expressed in several structures, including alar plate midbrain region; nervous system; optic vesicle; pectoral fin musculature; and proliferative region. Orthologous to human TK1 (thymidine kinase 1).

GO:

id name namespace
GO:0016310 phosphorylation biological_process

KEGG:

id description
K00857 tdk, TK; thymidine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_00571360_00574170.mRNA True 1158 mRNA 0.45 7 571263 574535

Neighbor

gene id symbol gene type direction distance location
CI01000306_00546664_00553895 MGEA5L coding upstream 17162 545665 ~ 554101 (+)
CI01000306_00534481_00545134 NA coding upstream 25942 534481 ~ 545321 (+)
CI01000306_00496203_00497820 CUNH21ORF2 coding upstream 72803 496203 ~ 498460 (+)
CI01000306_00442430_00460709 NA coding upstream 110080 442430 ~ 461183 (+)
CI01000306_00424179_00424623 NA coding upstream 146465 423776 ~ 424798 (+)
CI01000306_00630572_00641931 TMC6 coding downstream 56037 630572 ~ 642126 (+)
CI01000306_00664788_00672147 NA coding downstream 90186 664721 ~ 673052 (+)
CI01000306_00681384_00689565 NA coding downstream 106849 681384 ~ 689812 (+)
CI01000306_00693218_00693943 NA coding downstream 118683 693218 ~ 694559 (+)
CI01000306_00705287_00711760 CLCN4 coding downstream 130752 705287 ~ 714524 (+)
G430189 NA non-coding upstream 8751 558552 ~ 562512 (+)
G430192 NA non-coding upstream 37597 528636 ~ 533666 (+)
G430314 NA non-coding upstream 43281 527750 ~ 527982 (+)
G430313 NA non-coding upstream 44279 526703 ~ 526984 (+)
G430311 NA non-coding upstream 45929 525127 ~ 525334 (+)
G430095 NA non-coding downstream 5716 580251 ~ 584121 (+)
G430206 NA non-coding downstream 30756 605291 ~ 608291 (+)
G430170 NA non-coding downstream 34212 608747 ~ 612591 (+)
G430331 NA non-coding downstream 127448 701983 ~ 702194 (+)
CI01000306_00235686_00242814 NA other upstream 333894 235447 ~ 242861 (+)
G430409 NA other downstream 351009 925544 ~ 999902 (+)
G430452 NA other downstream 576062 1150597 ~ 1150938 (+)
CI01000306_01209847_01210850 ACYP2 other downstream 635198 1209395 ~ 1211232 (+)
G430719 NA other downstream 1573847 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 2398621 2973156 ~ 2979157 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003753 tk1 coding NC_007122.7 CM002895.2 45153104 ~ 45158056 (+)