CI01000306_00630572_00641931 (TMC6)


Basic Information

Item Value
gene id CI01000306_00630572_00641931
gene name TMC6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 630572 ~ 642126 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_00630572_00641931.mRNA
ATGACGTCTTGCATCTGGAGGGTCCAGCGTACCATCGGTCTGACAGCGAGGTGCCGCAGCAGACAGATCATTTGATTGGAGAACGCTGGTCATCTGACACGCTCAAAGTCCTGTCCTCGATGCCCAGCCGCACCATCGGTCGCAGTCGAGGAGCGATCATCTCTCAGTATTACAACCGCACCATGCAGCTGCGCAGACGCAGGCAGAGCAGACCCTCCATACAACACTTCCCTCGGTCTGCACGTCCCAGCATCCGCGGTTACCGCATGGAAACGGACGGAGACGATTTTGAGGTGGAAGAAGATAATAAGAGGGAGCGTTTAGTGAATAATCTGCAGAATCTGTCAGCGAATGATCGTGTGCGCATGTTGAGAGCGATGCCACTGAGTCTCGCAGAGAAGAAAGAGCTCAGGATGTTGGTGTTGAATAAAGCCGCACACTCTCTGTCTCAGAGTCAGATTCCCTGCTGCAGTCAGCTCAAGTATTACATCATCATTGCGCTGAGACAGGGATGGTACGGCTGGATGTCGTTCCTGTCCTCGCTGCAGTTGTGGCAAACGGCTCTGAAGTGTGTCGGCGGTCACTTCGGGACGGGCGTTCTGTCGTATTTCGTCTTCCTCAGAACGCTCCTCTTCTTCAACGTCTTCCTGTTCCTGGTCACGGGTCTGTTTCTGGTGGTTCCTCAGGCCGTGCTTCTGGATCGGGACCAGAGCACTAGCGTCAGAAGCACCTGGGGGCTGGAGGTGCTGACGGGCACTGGTTATTTCTCAGACTCTCTGCTGTATTACGGTTACTACAGTAACCACACACTACAGACGGACCGCAGCTGTTCTAAGTCCATGAACAGGACGTCCTGTGGGTCTGGACTGTCCTATAACATGCCTCTCGTTTACTTCTTCATCATCGGCGCGGCCTTCTTCGTCACCTGCATCATCCTCGTCTACAGCATGTCCAAGTCCTTCGGTCAGAGTTTTCGCATCGATAAATCTAAAGGCCTGTTGGCCATAAAGGTGTTCAGCTCGTGGGACTTTAAAGTCAGCAAGAAATCCTCCGTGGGACTCCAGCGAGCGAACATCGGCACACAGCTCAAGGAGCTGGTGGCAGAAGTCAACCGCAAAGAGCTGAAGTTTTCCGCTCTCCAGCGACTGTGGCGGCTGTTCATCCACATGCTGGCATGGATCTTATGTTTGGGAAGCACGCTGGGGTGTATGCTGGCTGTGTACTACTTCTCTGAACATATGCACAAGAAAGACGTCAAAATTCGTTCTAGTTCCTACCCTAATACGAGCTCGTCTGACAGCCTGTTGCTGAAGGAGGCGAGTCTGTTGGCCGTTCCTGTCATCATGTCCAGCATTAATCTGCTCCTGCCGGGATTCTTCAACGCCGTGGCCTGGATGGAGCAATATGATTCTCCCAGCGTGCTCAATTACGTCTCCATCAGCAGGAACCTGCTGTTGAAAGTGAGCGTGTTGGGAGTGCTGTGCTATCATTGGCTGGGCCGCGTGGCGTCGGACCCTAAGAGTCTGGGCTTACAGTGCTGGGAGAGTTTCGTGGGACAGGAACTGTACCGTTTCCTCGTGATGGACTTCATCTTCATGCTGCTGGACACTTTCTTTGGAGAGTTTCTGTGGAGGGTGTTTTCTCAGAAAGCTCTGAAGAGGAAGAGGAAACCCGTGTTTGATATCGCGCGGAACGTTCTGGAGCTCATCTATGGACAAACTCTGGCCTGTCTGATGATGAACTGTCAGGCGTCAGGGAAGCCGTGGCGCGCCTCTCAGATGACCACCATCTTCATCACGCTGCTGTGCTTCCCGTCGTTCCTGGGCGCCGCCGTGTGTGTGACGTACACCATGTGGACGATGAAGCCGTCGGACGGCTGCGGTCCGTTCCGCGGTCTGAAGACCATGTTCCAGGCCGGGAAGCAGTGGGTGCAGCAGCTGGCGGATGCGAACCCCAAACTGTCCTGGCTCGCCTTGGCTCACACGTACCTGGTGGAGAACCCGCTCTTCCTCTTCCTGTGCGCCGGCATCTTCCTGATAGTGATTTACTTCCACAGTCAGGTGGTCGACGGTCAGCGGAAGATCATTGATCTCCTTCAGGAACAGATTGAGAATGAGGGCGAGGATAAGAAGTTTCTCATCACGCGACTGCAGGACATCCATGAACGGAAGCGTGTCGTCTCACCGCGCCGCGTGCGAGAAGCCAGCGAGGGACTTTGTGATCACCTTTATTTGATTTTCACTCTTTGGCGAGTGTTTCAGAGCTTGTTTGCATCTGATTTCAGGATTCCAGTTTTTCCTGACGCTCTTGATGAACTGACGGAGACGCTGAGCAGTTCCTGCGGATGTGGAGCCGTATCAACTGACTGGACGCGCTTCTGCACTCGACTCTCACAGAAACCACTAGAGTCCTTCATGAACCACATGATGAAGATCAGATCAGATCTGGCGGTCAGATCTCTCACACTCAGGGTTTCTTAGTTGGTTTCTAGTAAATCTGTGGAAATGGACCCTTTACATTGGTGATGGTGTTTTCTTGCCGTCTTTATTACCAAGACACTTTTAACTTTACTGTGAAATGTGGACATATTTAATATTCACCGTTCCACCGCCCTGCCGCTCTCGGAGACTGGACCTTCCGTTTTAGTACTGTGATATTAGTGAACCAGTTTTTAA

Function

symbol description
tmc6 Predicted to enable mechanosensitive ion channel activity. Predicted to be involved in ion transmembrane transport. Located in Golgi apparatus; endoplasmic reticulum; and nuclear membrane. Implicated in epidermodysplasia verruciformis.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_00630572_00641931.mRNA True 2675 mRNA 0.53 17 630572 642126

Neighbor

gene id symbol gene type direction distance location
CI01000306_00571360_00574170 KITH, TK1 coding upstream 56037 571263 ~ 574535 (+)
CI01000306_00546664_00553895 MGEA5L coding upstream 76471 545665 ~ 554101 (+)
CI01000306_00534481_00545134 NA coding upstream 85251 534481 ~ 545321 (+)
CI01000306_00496203_00497820 CUNH21ORF2 coding upstream 132112 496203 ~ 498460 (+)
CI01000306_00442430_00460709 NA coding upstream 169389 442430 ~ 461183 (+)
CI01000306_00664788_00672147 NA coding downstream 22595 664721 ~ 673052 (+)
CI01000306_00681384_00689565 NA coding downstream 39258 681384 ~ 689812 (+)
CI01000306_00693218_00693943 NA coding downstream 51092 693218 ~ 694559 (+)
CI01000306_00705287_00711760 CLCN4 coding downstream 63161 705287 ~ 714524 (+)
CI01000306_00730637_00781399 CLASP1 coding downstream 88511 730637 ~ 781399 (+)
G430170 NA non-coding upstream 17981 608747 ~ 612591 (+)
G430206 NA non-coding upstream 22281 605291 ~ 608291 (+)
G430095 NA non-coding upstream 46451 580251 ~ 584121 (+)
G430189 NA non-coding upstream 68060 558552 ~ 562512 (+)
G430192 NA non-coding upstream 96906 528636 ~ 533666 (+)
G430331 NA non-coding downstream 59857 701983 ~ 702194 (+)
G430335 NA non-coding downstream 87777 729903 ~ 730241 (+)
G430344 NA non-coding downstream 164391 806517 ~ 806752 (+)
G430389 NA non-coding downstream 265197 907323 ~ 913761 (+)
CI01000306_00235686_00242814 NA other upstream 393203 235447 ~ 242861 (+)
G430409 NA other downstream 283418 925544 ~ 999902 (+)
G430452 NA other downstream 508471 1150597 ~ 1150938 (+)
CI01000306_01209847_01210850 ACYP2 other downstream 567607 1209395 ~ 1211232 (+)
G430719 NA other downstream 1506256 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 2331030 2973156 ~ 2979157 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003756 tmc6b coding NC_007122.7 CM002895.2 45233348 ~ 45244641 (+)