CI01000306_00887579_00889885


Basic Information

Item Value
gene id CI01000306_00887579_00889885
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 887190 ~ 890708 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_00887579_00889885.mRNA
GCATAAAACAGACCCAAAAGCTCCATCAATAAACTCCAGCGCCTGCTATTCATCACAGTCCAGTCGACTGCATGAGGAGCCGCAGCTTTTAAATCACCGGCTGGATTCTGTGCGACTCCTGAAAGCGTCTGACGGACGGCCGTGTGTGTTCTTTACGAGCTGCTGGCTGATGGCTCTCTTTGAAGGCCTCTAACAGGTGTGAGGGGCTTTTCTCCGTGAATCCTGGGCAAAGACATTGTGCCATTCAAGACCAGAGACCCTGCGGCATCCGAGAGCTCATTACGACGGATCAGTTGGGAAAAAAAACTCCGGCTTTACAAGCCCACCTCGTTAATTACGGCCACCGGTCGTTCACACGGCTGCGGTCTGACCTGAGATCAGCGCGCTCAATGGCCTGGTGTCTGTCTCTCACTAGACGTGCGGTTAAAAGCTTTTATTTAGTCGATGACGATGATGCAGAGCTGCTCTGCTGTCACGTGACCGTCGTTCACAGGTGGGCAGCTGTTCTAGTGAGGGAACATGTGTCGCAGGTCATTTCCTGTGTGAAAACGGACCATAAATCAGGAGAAAATACAGCTGTTTGTTATCAAAACTGCCTCAGAATCACACGCTTTAAGGGTAAAGCTATGCTGGTGTCGCGTCTGAATTAACATAAACGCGAGATGACGACTTGGAAGTGCGTACGGCAGCGTGACAAGAATCTTTTCCACATGCTTGTTCTTTTTTACTTTCAAAAACTGTACATTTAACAATCTTTTACTGTAAAATTACATGAAACGTCCCATTTGATTTTTCACTGTACATAGTAAGGGAACTCACCGTTAACCAATTATCGCAGTTTTACAATCTTTTACTGTTAAAGTAAGTATTATGATGATTTTTATAGCGTTGTGATGTCATGTGAGAACAAAAATAGCCAAAGTTCACAACCTCCACATTTCTGTTTGATGTATTTTATTGTAGTCAGTGTTACCTGGTGTGTTTTCTATGATTTTTGCACAAGAATTAATGAATAATTTTCACTGCAAAAAATGCTTTTCTTACTTTGTCGTTTCCAGTCTAAATATCTAAAAATTCATAAATCCAGAAGTAAAATAACATAAGATATTTTTTTCTTGTTTTCTGGGGGGGGAAATCAAAATGAAGCGAGTTTTTGTTTAAAACAAGCAAAATTATCTGCCAATTGAGTAAGAGAAATAATCGGACAGAAACAAGAAACAAGATTATTTTTCTTACTCAACTGGCAGATCATTTTGCTTGTTTTAAGCAAAAACTCGCTTCATTTATTATTTTTTTCCCCGGAAAACAAGAAAAAATATCTTATGTTATTTTACTTCTGGATTTATGAATTTTTAGATATTTAGACTGGAAACGACAAAGTAAGAAAAGCATTTTTTGCAGCGAAAATTATTAATCTCTGCATTAATTCTTGTGCAAAAATCATAGAAAATGCACCAGGTAACACTGACTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_00887579_00889885.mRNA True 1473 mRNA 0.40 2 887190 890708

Neighbor

gene id symbol gene type direction distance location
CI01000306_00730637_00781399 CLASP1 coding upstream 105791 730637 ~ 781399 (+)
CI01000306_00705287_00711760 CLCN4 coding upstream 174605 705287 ~ 714524 (+)
CI01000306_00693218_00693943 NA coding upstream 192631 693218 ~ 694559 (+)
CI01000306_00681384_00689565 NA coding upstream 197378 681384 ~ 689812 (+)
CI01000306_00664788_00672147 NA coding upstream 214138 664721 ~ 673052 (+)
CI01000306_01008614_01011977 RALB.S, RALBA, RALBB, RALB.L, RALB coding downstream 117906 1008614 ~ 1011977 (+)
CI01000306_01047698_01080329 TMEM63A, TMEM63B coding downstream 156990 1047698 ~ 1082259 (+)
CI01000306_01209847_01210850 ACYP2 coding downstream 318687 1209395 ~ 1211232 (+)
CI01000306_01224349_01255175 NA coding downstream 333442 1224150 ~ 1255472 (+)
CI01000306_01278230_01279369 NA coding downstream 387522 1278230 ~ 1279484 (+)
G430344 NA non-coding upstream 80438 806517 ~ 806752 (+)
G430335 NA non-coding upstream 156949 729903 ~ 730241 (+)
G430331 NA non-coding upstream 184996 701983 ~ 702194 (+)
G430170 NA non-coding upstream 274599 608747 ~ 612591 (+)
G430389 NA non-coding downstream 16615 907323 ~ 913761 (+)
G430419 NA non-coding downstream 93807 984515 ~ 984938 (+)
G430400 NA non-coding downstream 112150 1002858 ~ 1026103 (+)
G430425 NA non-coding downstream 142512 1033220 ~ 1045108 (+)
G430433 NA non-coding downstream 179660 1070368 ~ 1071227 (+)
CI01000306_00235686_00242814 NA other upstream 649821 235447 ~ 242861 (+)
G430409 NA other downstream 34836 925544 ~ 999902 (+)
G430452 NA other downstream 259889 1150597 ~ 1150938 (+)
G430719 NA other downstream 1257674 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 2082448 2973156 ~ 2979157 (+)

Expression


Co-expression Network