CI01000306_01284891_01287606


Basic Information

Item Value
gene id CI01000306_01284891_01287606
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1284677 ~ 1287630 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_01284891_01287606.mRNA
AGAGGACTGTGGGTAGGGCAAACAATGGCGGCAGTGTTCCTCCCCTCGGCCCCGGCAGAAACCGCGGGGAAGGCTGCAGGAATTCGGCAGCATCTGGACTTAACGTTGGATTTATCTGCATCCTGTGGCGTGAACGTCAGCAGAATGGAATTCCTAAGACTTCCTGTGCGCTGCGGAGTGGACAGATCGCTGAGGTCACAGTATCACGTTCGGCTCTGGCCGCAGCATGCAGATCGAAAATAAACCTAGAGTTTCAACACTTTTGGTTAAAACCACAACACACAGTCTGAACCGAGGGCAAAAATAATAAA
>TU495870
GTTCGGCTCTGGCCGCAGCATGCAGATCGAAAATAAACCTAGAGTTTCAACACTTTTGGTTAAAACCACAACACACAGTCTGAACCGAGGGCAAAAATAATAAAGACGTGAAGTTTAAAAGATTTTAGAGGCAGTTTATGTGAGCGCTGATGAAAAACACATGCAGCGCAAAACAAGGTACTCATAAAGACAACATCGTCGTGTATTTTTGGGCAAAACAGAATATTGTGGGAAATATTGTAGGGTGGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_01284891_01287606.mRNA False 311 mRNA 0.52 2 1284823 1287630
TU495870 True 250 lncRNA 0.41 1 1284677 1284926

Neighbor

gene id symbol gene type direction distance location
CI01000306_01201604_01202608 FOXG1B coding downstream 80750 1200682 ~ 1204073 (-)
CI01000306_01120958_01127237 SULT6B1 coding downstream 157263 1120816 ~ 1127560 (-)
CI01000306_01109880_01112379 VIPB coding downstream 172020 1109779 ~ 1112803 (-)
CI01000306_01086915_01093095 SLC29A1B coding downstream 191722 1086768 ~ 1093101 (-)
CI01000306_01024523_01027114 NA coding downstream 257692 1024340 ~ 1027131 (-)
CI01000306_01439864_01463150 NA coding upstream 152156 1439786 ~ 1463150 (-)
CI01000306_01469486_01475137 NA coding upstream 181158 1468788 ~ 1475137 (-)
CI01000306_01476783_01478195 NA coding upstream 189034 1476664 ~ 1478195 (-)
CI01000306_01483485_01492511 ATL2, ATL2.L coding upstream 195242 1482872 ~ 1492511 (-)
CI01000306_01502721_01504240 NA coding upstream 215036 1502666 ~ 1504240 (-)
G431849 NA non-coding downstream 4753 1279518 ~ 1280070 (-)
G431823 NA non-coding downstream 6137 1236441 ~ 1278686 (-)
G431818 NA non-coding downstream 23235 1247340 ~ 1261588 (-)
G431810 NA non-coding downstream 62463 1221861 ~ 1222360 (-)
G431792 NA non-coding downstream 102645 1181732 ~ 1182178 (-)
G431853 NA non-coding upstream 2320 1289950 ~ 1290345 (-)
G431815 NA non-coding upstream 20401 1308031 ~ 1310878 (-)
G431814 NA non-coding upstream 24072 1311702 ~ 1312434 (-)
G431855 NA non-coding upstream 35544 1323174 ~ 1323386 (-)
G431857 NA non-coding upstream 36711 1324341 ~ 1324541 (-)
G431706 NA other downstream 121485 1163027 ~ 1163338 (-)
CI01000306_00482506_00494090 PFKLB, PFKL other downstream 801174 482482 ~ 494090 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other upstream 430303 1717933 ~ 1726043 (-)
G432022 NA other upstream 1712606 3000236 ~ 3003891 (-)
CI01000306_04544349_04545034 NA other upstream 3255093 4542723 ~ 4545244 (-)
G433450 NA other upstream 4074013 5361643 ~ 5383763 (-)
G431852 NA non-coding upstream 1658 1286584 ~ 1286787 (-)

Expression


Co-expression Network