CI01000306_01308428_01312462 (SPTBN1)


Basic Information

Item Value
gene id CI01000306_01308428_01312462
gene name SPTBN1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1308428 ~ 1312870 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_01308428_01312462.mRNA
ATGTTGGAGAACCAGGTGGAGGTTCGTCAGAGGGAGGTGGAGGAGCTTCAGTCTCAAGCTCATGTGCTGCGACAGGAAGGAAAGGACACGGACGAGGTCGATGGACGTCGGATCGAGGTGGAGCAGAAGTTCCAGGAGCTGCTGGAGCCGCTGTTGAAGAGGAAAAACTTCCTCATGGCCTCTCGTGAGATCCACCAGTTTAACCGTGACGTGGAGGATGAGATTCTTTGGGTTGAGGAGAGGATGCCTCTTGCTACGTCGACAGACCATGGCAACAATTTACAGACTGTTCAGCTACTTATCAAGAAGAACCAGACATTACAGAAGGAGATCCAGGGCCATCAGCCTCGCTGTGACGACATATTCGAGCGCAGCCAGAGCATCCTGAAGGCCGACAGCCCCAACGTGGAGTCGATCCGAGCCCGACTGACCGACCTGCAGCAGCTGTGGAGCCTGATCATCCAGGAGACGGAGAAACGCCACACCAGACTCGAGGAGGCCCATAAGGCCCAGCAGTACTACTTCGATGCAGCTGAAGCTGAAGCCTGGATGAGCGAGCAGGAGCTCTACATGATGTCTGAAGAGAAGGCCAAAGATGAGCAGAGTTCAGTGGCCATGCTGAAGAAACACCAGATCTTGGAGCAGGCGGTGGAGGACTATGCTGAGACTGTTCACCAACTGTCCAAGACGAGCCGAGGCCTGGTGGCCGCCAACCACCCTGAGAGTGAGAGGATCGGCATGCGCCAATCACAGGTGGATAAGCTGTACGCTGGACTGAAGGACCTATCAGAGGAGAGGAGAGGCAAACTGGAGGAGAGGTTCCGCCTCTTCCAGCTGAACCGGGAGGTGGACGATCTGGAGCAGTGGATAGCCGAGAGAGAGGTGGTGGCTGGATCTCACGAGCTCGGCCAAGACTACGAACACGTCACTATGCTGCAGGAACGCTTCCGTGAATTCGCCCGGGACACCGGAAACATCGGTCAGGAGCGTGTGGATGGCGTCAACCGCATGGCGGACGAGCTCATCAACGCTGGCCACGCCGACGCCGCGACTGTCGCCGAGTGGAAGGACGGTCTGAACGAGGCCTGGGCCGATCTGCTGGAGCTCATCGACACGCGTACGCAGATTCTCGCCGCATCCTACGAGCTGCACAAGTTCTACCACGACGCCAAGGAAATCCTGGGACGCATCCTGGACAAGCATAAGAAGCTTCCAGAAGAGCTGGGCCGAGACCAGAACACGGTGGAAACCTTGCAGAGGATGCACACCACATTTGAGCACGACATCCAAGCACTTGGAACGCAGGTCAGGCAGTTGCAGGAAGATGCCGTGCGCCTGCAGTCAGCATATGCTGGAGACAAAGCCGACGACATCCAGCGGCGTGAGGGCGAGGTGCTGGAGGCCTGGAGGAGTCTTCTGGAAGCCTGCGAGGGCCGACGGGCACGACTGCTGGATACCGGAGACAAGTTCCGCTTCTTCAGTATGGTGCGTGACCTCATGCTCTGGATGGAGGACGTCATCCGCCTTATCGAGACTCAGGAGAAGCCCAGGGATGTGTCATCTGTGGAGCTTCTCATGAACAACCACCAGGGTATCAAAGCTGAAATCGATGCCCGTAATGACAGTTTCACGGCCTGCATCGAGCTGGGCAAGTCTCTCCTGGCGCGGAAACACTATGCATCAGAGGAGATTAAAGAGAAGTTGCTGCAGTTGACGGACAAGAGGAAAGATATGATTGACAAGTGGGAGGACAGATGGGAGTGGCTGAGACTGAGTGAGTATGATAGGAAATGACTCAGTGTTATGAACCATTAGAAAGTAGTTTCCCCAGCTGTATGAAGATTAGCATAAAACTGATAAAACGTTATTATAAATAAATATGTTAGTATAAAAAAAAATTAAATAAATGTAATGTTAAGTTTAGTATAAAGCTAATATATATAATTTATTAATATAAATAATACATTCATATTAATATATTAAACATATTATTTCTGTAAAATTATTAAATTAAATAAATATAATATATTAATGTTAGTATAAATTTAATAGAATATATTTTAGTAATATATTAAATCTATCATGTCAGTATAAAATTAAATAAATAAATATAATATATTAATATAAATTTTTATTAATATATTAAATGTATTTTGTAAAAAATATATATATACATGTAAGGTTAGTATAAAACTAATGTAA

Function

symbol description
sptbn1 Predicted to enable actin binding activity and phospholipid binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to act upstream of or within actin filament capping. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of spectrin. Orthologous to human SPTBN1 (spectrin beta, non-erythrocytic 1).

GO: NA

KEGG:

id description
K06115 SPTB; spectrin beta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_01308428_01312462.mRNA True 2202 mRNA 0.49 9 1308428 1312870

Neighbor

gene id symbol gene type direction distance location
CI01000306_01293889_01308316 SPTBN1 coding upstream 112 1293668 ~ 1308316 (+)
CI01000306_01278230_01279369 NA coding upstream 28944 1278230 ~ 1279484 (+)
CI01000306_01224349_01255175 NA coding upstream 52956 1224150 ~ 1255472 (+)
CI01000306_01209847_01210850 ACYP2 coding upstream 97196 1209395 ~ 1211232 (+)
CI01000306_01047698_01080329 TMEM63A, TMEM63B coding upstream 226169 1047698 ~ 1082259 (+)
CI01000306_01315927_01321358 NA coding downstream 2662 1315532 ~ 1322294 (+)
CI01000306_01329678_01378388 EML6, EML5 coding downstream 16808 1329678 ~ 1378510 (+)
CI01000306_01387861_01391135 NA coding downstream 74732 1387602 ~ 1392321 (+)
CI01000306_01429843_01430151 NA coding downstream 115943 1427779 ~ 1430275 (+)
CI01000306_01481595_01481955 NA coding downstream 168725 1481595 ~ 1482496 (+)
G430182 NA non-coding upstream 18518 1288725 ~ 1289910 (+)
G430142 NA non-coding upstream 21667 1284690 ~ 1286761 (+)
G430113 NA non-coding upstream 38313 1236345 ~ 1270115 (+)
G430478 NA non-coding upstream 114468 1193748 ~ 1193960 (+)
G430477 NA non-coding upstream 115709 1192517 ~ 1192719 (+)
G430489 NA non-coding downstream 10193 1323063 ~ 1324428 (+)
G430492 NA non-coding downstream 71764 1384634 ~ 1384851 (+)
G430497 NA non-coding downstream 82882 1395752 ~ 1395970 (+)
G430498 NA non-coding downstream 84043 1396913 ~ 1397177 (+)
G430499 NA non-coding downstream 86748 1399618 ~ 1399833 (+)
G430452 NA other upstream 157490 1150597 ~ 1150938 (+)
G430409 NA other upstream 308526 925544 ~ 999902 (+)
CI01000306_00235686_00242814 NA other upstream 1071059 235447 ~ 242861 (+)
G430719 NA other downstream 835512 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 1660286 2973156 ~ 2979157 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 2461274 3772689 ~ 3777550 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other downstream 2465182 3778052 ~ 3783019 (+)
CI01000306_03807268_03810946 NA other downstream 2495363 3807268 ~ 3811243 (+)

Expression


Co-expression Network