CI01000306_01315927_01321358


Basic Information

Item Value
gene id CI01000306_01315927_01321358
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1315532 ~ 1322294 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_01315927_01321358.mRNA
GTATATAAACTAAAATTAAAATTAAATCAACATTTTGTGCAAGATTTATTAAAAAAATTATTAAAAGCACAGTCAATATTTTTTTAAACTGATGCAAGGGGATCTTTCACTTCACCGGTCAAGCGAGATCTCAAAACGGCCTGCATGTGTCAGTCTACCACTGAACAAGAATATGATTTCATACAGTGTTCATAAGTAACGTTATGGCTTCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCACAGAGAAGGAGAGCAGATTGCCCAGAACGGACTACCATCAGACCAGGACTCGCCACGGGTTAGTTACCGCTCCTGTACCTACCCACAATACACTACCAGTCAACAGACACCACGAACTACCGGTCAGGGTCACTGACAGTTCCCATAATGCTCTCTGATGATCCCATATCAGTGACAAACACCTTTGCACCATCTGTGCTTGTCAGCTGTTTATTAACTACCGTCAGGTTATCAGTAATGACAGATGGAGTGGACGGCGAGATGAACGGAGTGGCCGAGAGGAGCTCGAAGGAGCCGAGTCCGATCCCGTCACCGACCGCAGACAGACGGGGGAAAGGCAGCCAGTCCGCAACGCTGCCGGCTAAAGGCCAGGAGACGCCGTCCGCCCAGCTGGAGGGATTCCTGCACCGCAAACACGAGTGGGAGGGTCACAACAAGAAAGCGTCCAGCAGATCCTGGCATAATGTGTACTGTGTCATCAATAACCATGAGATGGGCTTCTACAAAGACAATAAGAGCGCGGCTCAGGGCATCCCGTACCACAACGAGATCCCCATCAGCCTGAAGGACGCCGTCTGCGAGGTCGCCGTTGACTACAAAAAGAAGAAGCATGTTTTCAAGCTCAGAGTTACTGACGGAAATGAGTATCTCTTCCAAGCCAAAGATGATGAGGAGATGAACACATGGATTCAGGCCATTCAGAACGCCGGCAGCGGCTCCTCGTCCTCCGAGAAATCCGAGATCACGCCTAGCAACCAGAGCACGCCCGCCTCCAGCCGCGCCCACACGCTCCCGGCAACCGTCACCCTGACGACCGAATCCAGCCCCGGCAAGCGCGAGAAAGACAAGGAGAAGGACAAAGAGAAGCGCTTCAGTCTCTTCAGCAAGAAGAAGCAGTAGACGTCCGTCTGTTCCCCTGGCAACAGAAACATTCGATTCTCTCATTCCCTTAATTCTTTTACGACTTCTTCTCATTTCGATTCTGTCATTTTGTTTGTGTCTGCCCACCTCCAGTGATATCCCAGCATGCAAAGCTCATGAAGATGCCACACTCTGTGCCTGACACCCCACGAATTGGGTTCCAAAGTTGTACAAAACGAAAGGAAAATGTTTAACACAAAAAAAAAAAAAGCAAGAGTGTGTCGCGAATCGATTCCAATCCCGATTTGGAAGTTTTAAAGGACCGGATGTGTTTTTTTACGCTCTTACGTTTCTATTGTGGTTGATTTTCAAATCCTGAATCTTGCTCTCTCTCGTTTTTGTATCTGTGTGTCATTGAGGGGTCTGGATATTTAAAACATTTTCCTCAATTTTGTGAGGCTGTCTTGGAGAGACGACGAATCTCTCTTTGTTGTTAGGGAACAAGACAGTGATGCTTCGAAACGATTCCATTGTCCCGCCAGCAGGTGGACGGACCGAGAAAATTCCACGTTAACGAATTGTTGCGCTGAAATAGCTACGCCAAGTTTCGTCAGATTTGCCTTTTAACGAATATAAGCTGATAAAACAGATACTTGCTAATATGAAAGTAGACTAACACTCGCTCGAGGGCCTGGTAGACTTGTGTCATGTGATCAGATCAAGGCGGGTTGTACCAAACTCTAAGAATGTTTGCTATATACAGAGGACTAGTAACCTGAATCAATTTTTTTTCCTTTTTGTTTGTTAATTGTCATTTCTCTTGGGTTTTATCATAATATATGTTTCAAATAATTCTAGTACAGAGTATAAAAATTAGATGTATTATAAACACTTTAAAGCATCAATGTTAAGTGAACAGTGGAACATTTACTGGTACAAAGGTAATGTTACTCCAACAACAACAACAAAAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_01315927_01321358.mRNA True 2084 mRNA 0.45 5 1315532 1322294

Neighbor

gene id symbol gene type direction distance location
CI01000306_01308428_01312462 SPTBN1 coding upstream 2662 1308428 ~ 1312870 (+)
CI01000306_01293889_01308316 SPTBN1 coding upstream 7216 1293668 ~ 1308316 (+)
CI01000306_01278230_01279369 NA coding upstream 36048 1278230 ~ 1279484 (+)
CI01000306_01224349_01255175 NA coding upstream 60060 1224150 ~ 1255472 (+)
CI01000306_01209847_01210850 ACYP2 coding upstream 104300 1209395 ~ 1211232 (+)
CI01000306_01329678_01378388 EML6, EML5 coding downstream 7384 1329678 ~ 1378510 (+)
CI01000306_01387861_01391135 NA coding downstream 65308 1387602 ~ 1392321 (+)
CI01000306_01429843_01430151 NA coding downstream 106519 1427779 ~ 1430275 (+)
CI01000306_01481595_01481955 NA coding downstream 159301 1481595 ~ 1482496 (+)
CI01000306_01578460_01578838 NA coding downstream 256166 1578460 ~ 1579027 (+)
G430182 NA non-coding upstream 25622 1288725 ~ 1289910 (+)
G430142 NA non-coding upstream 28771 1284690 ~ 1286761 (+)
G430113 NA non-coding upstream 45417 1236345 ~ 1270115 (+)
G430478 NA non-coding upstream 121572 1193748 ~ 1193960 (+)
G430477 NA non-coding upstream 122813 1192517 ~ 1192719 (+)
G430489 NA non-coding downstream 769 1323063 ~ 1324428 (+)
G430492 NA non-coding downstream 62340 1384634 ~ 1384851 (+)
G430497 NA non-coding downstream 73458 1395752 ~ 1395970 (+)
G430498 NA non-coding downstream 74619 1396913 ~ 1397177 (+)
G430499 NA non-coding downstream 77324 1399618 ~ 1399833 (+)
G430452 NA other upstream 164594 1150597 ~ 1150938 (+)
G430409 NA other upstream 315630 925544 ~ 999902 (+)
CI01000306_00235686_00242814 NA other upstream 1078163 235447 ~ 242861 (+)
G430719 NA other downstream 826088 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 1650862 2973156 ~ 2979157 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 2451850 3772689 ~ 3777550 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other downstream 2455758 3778052 ~ 3783019 (+)
CI01000306_03807268_03810946 NA other downstream 2485939 3807268 ~ 3811243 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location