CI01000306_01387861_01391135


Basic Information

Item Value
gene id CI01000306_01387861_01391135
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1387602 ~ 1392321 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_01387861_01391135.mRNA
ATATATAAACGTGATTTGACTTGCAAATGAGGTGTTTCCAGACTCGTCCCTCTGCGTCAACGCTGGTTGGTCGCGCCAGACCTCATTAGCATGCGGTGGGCGTGTCTGCAGCGTATCAGTCAGATGAATGAGTAGAGCGCGTCAGTCGCGCATCGGGCAGCGAGTGAGAACTCAGCCGCTCACCGGCGCTCAGAATGCGGCTGCTACTGTGAACTCATCCCGCTCCCGTTCCCTGTGACGCCAACACTGAACGGGAAACATGTGGAACACTAAAAGAGGAACCTGCCTAAGCAGCAAAGGAGAGATATGGGGTTTGTTCATTCTCCTCCTGTACACCAGTCCTCTCTCCTGCTCTTCAAATTTCAGTCACCTCATCTATAAGATAAAAGAAGGATTACCTAAAGGGACACTCATAGGGGCTATCAGTAAGGACTTAAACTTGGATCTTTCCAGCGATCCCCCTCGCTCGTTTAATCTGGAGCAAAAAACGGCCGGCCAGCAGTATGTGAGTCTGAACAACACGACGGGGGAGCTGTTCACATCTGCCGTGGAGATCGACAGAGAGGCTCTGTGTGCCGAGTCCCACGAGGGCCAGGGCTGTGCAATCTTTCTGGATGTGTTAATCCTTCCTCAGCAGTATTTTCAGCTGGTTAAGATTAAGATCATCATCGAGGATGTCAATGATAACCGTCCACACTTCCCCGTTAACGAAATCACAATGTTCGTGCCAGAGAACGCACCGGTCAACGCCAGGTTCGCAGTGGAGCAATCAGCAGTGGATCCCGACATCGGGATTCATGGCGTTCAGACGTACTGGCTAGTTAACGACTATGGGGTTTTCACATTAGATGTAGAGGAGAACGAAGGGGGAGAACTGACGCCCTTTCTCATCATTATCGAGTATCTTGATAGGGAGACTCAAGCGAAGTATGTGACTGAGATTATAGCCGAGGACGGAGGCTCTCCGCCACTTCTGGGCACTGCCACTCTGACGATTATCATCACGGACGTCAACGACAATTGCCCCAAGTTTACAGAGTCACAAGTGAACGTTACCCTTTATGGAAACGCCACTAAGGGCATGCAGTTGGCTCGTCTACAAGCCTACGACCCGGATGAGGGGGCCAACGCCTTGATCACGTACACCTTCAGCGAACGGGTCTCCCAAGAAAGCAGAAACCTGTTTCATTTGGATACAATCACAGGGGTTCTTAAACTAGCAGGGAAGATAGACAACAATACCGGAAAGCTCTACAAACTAACCGTACTGGCCAATGGGCCAACATGTATTCCAGAAGTTGCAACGGTTACCATTCACGTCATCAGACAGCTTTCTGGCCCTCCGGCGGTTATACCGCGTTATATCGCGTCTGAGAAGGACGGGGTTGTGAGTTTAAGCGAATCAGAGCCACCGTTTTCACCCATTGCTTTTTTTACCATCAAAAACACTGAGCCACAACAGAAGATAGAGTGTCTTCTAGAAGGTACGGGTCCGTTTAGGCTTGTACCGTACGAACGCTTCAAAAACGAGTACTTGCTTGAGACCACTGAAGTACTGGATTATGAGCAGCAACAGGATTATGAAATGGTTGTTGTGGTCCGTAATGCTCATGGATTAGTAGTTAATACCGTAGTGAAGGTCCACGTGTTGGACGTTAACGACAACGCTCCGGTTTTCAAGCAGTCCTTCATTGACGTCACCGTGGAGGAGAACAACCCACCGAACACGTTCCTCGCTCAGCTTCAGGCGACCGATGCGGACAGTGAAAGCAGAGGCGAGGTTTATTACCTACTCGGTGCCGACGCTCCCACCATTTTTGACTTGGATAGGTCAACCGGGGTGTTGACGGTGTCCACGTCTCTTGACCGCGAGGAAAAGGAGACGTACCGCTTCATGGTGCGGGCCGTAGACCGCGGGACGCCGAGAAAGGAGTCAATCGCTACTGTGATTATCACCGTGCGGGATCGCAATGACAACAGTCCTCGCTTCATCAACAAGGATTTCACCTTCTTTGTGCCAGAGAACTTTCCAGGATTCGGGGAGATCGGCGTGCTCACGGTCACGGATGCGGACGCCGGGGAGAACGGATGGGTGGCTTTGTCCATCCTCAATGGGAGTGACATCTTCGTAATTGACACCGGACGAGGAGCGTTGCGGGCCAAGACCTCTCTGGATCGGGAGCAGCAGGGGACGTACTATGTCTGGATCGAGGCTATCGACGGAGGCGAACCGGCTCTTTCTTGCATCACAATGGTGACCGTTCTCCTCCTAGATGTCAACGACAACCCTCCGACTGTTCTTTTCCCCCAGTCAAACCAGTCATACATGCTGGTGCTTCCCAACACGCTTCCGGGAACGTCTATAACGGAAGTCTACGCGGTGGACCGGGACACGGGAATGAACGCTGTTATTGCTTACAGCATCATCAAGAGGACAGACGGAGAACCGGGATCGTTTGACATCGACCCGTACACAGGGAACATCACCTTGAGGAAAGCCCTGAACAATCGAGGACTATATAGTTTGTGGGTCAAAGTCAGGGATCACGGTCAACCAGAACTCTACTCTACTGTACTGGTCAACCTGTTTGTGAATGAAACGGTCAGCAATGAGACTCTCGTTCAGAGCTTGTTGCCCAGAGTGGTAGATATTGACCACGGCGAGGATCCTCCAGTTAAGGAAGGGAGGGAGGGTGATCGAGTGCCAAATCCGTGCCGCGAGTTGCAAGTGGTATTGCTTGCGCTGACGACTACCTGCCTCGGACTGTTTCTGACCGTTGTGTCATTGGTGACATTCATTTGCTGCAAGAAAAGAAAGCCGAAAAAGAAGAGATTAGACATCGAGATTCCTTTAAAACTCAACCATGAAATGGTGGACAAGAACCCAATGGAGATTTCAAACATATGACACTTGCCTGCTCAGCAAAAGACTGCTCGTACTGCCCAAATTATTCTGTTTACAATGTGTTTTGTGCATCTTAATATCTCTTTAAGTATAAAAAATGTATATATTGTGCATACAGTATGTTTTATAACTATGATGAAATCTATATATATATATATATATATATATATATTGACAAGATCGCTGCAAAATTTAAAGATTTTGCTATTTGCATTCGCTGCCCAACATGCTTTTAATGTATCTTACAATGGTGCCCTCAGCAGTGTGTTGTGTCAAATTGTCAAACCTCTTTTATATGCCTGTCTTTGAAGCCCAATGCAGTTATTTACAAGAACATGGTTCTCCCTGTGGAAAGCTGTTCCCGTTCAGATGTTATGCTCCTCAAGTTTGTCATCACCTTTCCAAAAGAGATGAGAAATCAATTATTTTTCAGTGATTAACAGAAGTCGTTTGTGTTTTCTAGGGATGCACCGATATGAAAATTTTGGCGGATACCAATAACCGATAATTCTTTATATGTGAAATCCGATAACCGATATATTGGCCGATAAATCTAAATTAAACTTTTTACAGAGCCTGATTACGAAAACAAAAGTTCTTTTCTTATCGATAACAATAAAAAGGAACATATATATCGGCCAATACCGATATGGTGTCCGATATATCGTGCATCCCTAATCTCTTGAGCCCCAAAATGTCTCGGTTCCTCCAACTGATTTGTTCAGATCTGTTTATGATGAATTTTTTACGTTTGTGGACTCAACTCAAAACCTTTTTTCAAAGAAGCTAAAGCTACATTTCTCTGATCTTGTTTCTCTGATGTGCAAGCAAAGAATTCATGAACATTAAAGTGCTTTATTTTCTTATTAATAGCTTGGATATGATGTTTTTTCATGTATTAGTAACTAAACTGGTATTATGACTCAGCAGTAACTGCTGAAAAATGCTTATCCTCATTTAAGCATCAATTTACACTGTTAAGATATTGTTCTTGGGAATCTACTGTAAATCGTTACGAGAAATCAAAAACCATTTGATTAGATCACTGTTTACAAGTTGAAGTGACTCTGTCTTGGAATGTGTACACATAGCATTGTGGTTTTTCTTTGGAAGAGATAAAATCCAAAGGGTTATCAAGAAGCATCTTATTAGAAACCAAGATGCAAACTAACAAAATTCCGCTGTTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_01387861_01391135.mRNA True 4094 mRNA 0.46 2 1387602 1392321

Neighbor

gene id symbol gene type direction distance location
CI01000306_01329678_01378388 EML6, EML5 coding upstream 9092 1329678 ~ 1378510 (+)
CI01000306_01315927_01321358 NA coding upstream 65308 1315532 ~ 1322294 (+)
CI01000306_01308428_01312462 SPTBN1 coding upstream 74732 1308428 ~ 1312870 (+)
CI01000306_01293889_01308316 SPTBN1 coding upstream 79286 1293668 ~ 1308316 (+)
CI01000306_01278230_01279369 NA coding upstream 108118 1278230 ~ 1279484 (+)
CI01000306_01429843_01430151 NA coding downstream 36492 1427779 ~ 1430275 (+)
CI01000306_01481595_01481955 NA coding downstream 89274 1481595 ~ 1482496 (+)
CI01000306_01578460_01578838 NA coding downstream 186139 1578460 ~ 1579027 (+)
CI01000306_01627469_01632656 RFC4 coding downstream 235148 1627469 ~ 1632729 (+)
CI01000306_01639496_01661857 ANKRD13C.S, ANKRD13C, ANKRD13C.L coding downstream 246744 1639065 ~ 1663148 (+)
G430492 NA non-coding upstream 2751 1384634 ~ 1384851 (+)
G430489 NA non-coding upstream 63174 1323063 ~ 1324428 (+)
G430182 NA non-coding upstream 97692 1288725 ~ 1289910 (+)
G430142 NA non-coding upstream 100841 1284690 ~ 1286761 (+)
G430113 NA non-coding upstream 117487 1236345 ~ 1270115 (+)
G430497 NA non-coding downstream 3431 1395752 ~ 1395970 (+)
G430498 NA non-coding downstream 4592 1396913 ~ 1397177 (+)
G430499 NA non-coding downstream 7297 1399618 ~ 1399833 (+)
G430502 NA non-coding downstream 14709 1407030 ~ 1407249 (+)
G430504 NA non-coding downstream 16009 1408330 ~ 1408560 (+)
CI01000306_01209847_01210850 ACYP2 other upstream 169045 1209395 ~ 1211232 (+)
G430452 NA other upstream 236664 1150597 ~ 1150938 (+)
G430409 NA other upstream 387700 925544 ~ 999902 (+)
CI01000306_00235686_00242814 NA other upstream 1150233 235447 ~ 242861 (+)
G430719 NA other downstream 756061 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 1580835 2973156 ~ 2979157 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 2381823 3772689 ~ 3777550 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other downstream 2385731 3778052 ~ 3783019 (+)
CI01000306_03807268_03810946 NA other downstream 2415912 3807268 ~ 3811243 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004366 pcdh20 coding NC_007122.7 CM002895.2 42910904 ~ 42918971 (-)