CI01000306_01429843_01430151


Basic Information

Item Value
gene id CI01000306_01429843_01430151
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1427779 ~ 1430275 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_01429843_01430151.mRNA
ATATAAATACATAGTTACAAGACAAAAAAAAAATTACTGGCATACTTTTATAATTCACCACCTTAAAAAATGCTGGGCTAAAAACAACCCAAGCTGGGTTGAAAATGGACTCAGTGATTGGGTTGTTTTAACCCAGCGGTTGGGTTAAATGTTTGTCTAACGTGCTGGGCAGTTTTATTTAAAAATGACTATATGTCTGACTTAATATGAACCCAAAATATGTTGGAAATTAAAAATCAGACAGGAAACAATAATAATCAAAAGGTAAACATTTATTAATAAGCAATTTAATAAATGTTTATCGTTTAATTATTATTCATTAAACTTGTTCATTTATTAAACATAATAAACATTCATTTCCAACATACTTTGGGTTCATTTTAAGCAAAGTAATTTTTAAACAATAGTTGAGTTAAATAAAACTGACCAGCATGTTGGTCAAACATTTAACCCAACCACTGAGTTTGTCCAGTGTTATTTGATCAGTATAAAGAAAGTATTACAAAAAAAACTATTGTGTTTAATAAATAAAGTAATAAGAATGTGCTTAATAGTAAAGGGGGAAAATAGTCCTAAAACCAGGCTTAATTTGATCTTTTTTCCTTTTAAATTTAAGGTGAAATATGATCCAGACATATTCTTGACAGGTTTCACGTTCCAAAATCTTTTATCGCGGTCTGAATTCAGACTAAAGCAGCGCTGCACATTAGAAGTTGCTACATTAGTTTCATTGTAATGAAGCACTAACATTTTGGCACTTTCTTCAGCTCTGTAAATTAACACATCAGGAGCCACAATGGTGGTGTAAAAGTCTTCGTGGGAGGCCGCTAGTTTAAGATGAATTAAGAAAGCGATATCCCACCATCAAACCGCTGGAACGGTCCCTCCTCGCTCTCCATCTTTACAGCTCCGCTCAACTGGATGAAACACGGTTACCTCGACCCAAACGCTCCCACCCATCGCTTCAGTAACCGCCTCATAAACTAAACCTGAGACTAACAAATCTATTGTGTCTGTGTCCTTTGCACTTATGTCTGCCCTGACCGCCTTCTATCCCACAATGCTCCTCTGTTCAGAGGTCGTCCCGGGAGAACGGCACATAAAGGACGTGAAGCCTATATCACAAGGTTCATATAACACTGTGACCGAAGCGAAGAGTCTCGAGTCCACGGCAGAAGTGGAGAAAGAGGTTTCCTCACTCGGCCAGGAAAGCATTCCTCTTTCTGTTCACGCCGCTTATCGGGTTCCAGACTGGAGCTATGAAAGAGAAAACGGCATGAGAACAACAGAGAAAGAAAGAGACCCCTTTATAGAGAGAGAGAGAGAATTGTTAGGTTGAGACACAACTGAAGAGAGGAAAATCACTGTTGTGACCAGATGTTGCTCTTGTGTGGCTCAGGAGAGATCCTAGATGTTTAAATGGATTATCAACCTCATCTCCAATGTTTCTTTTAAAACCTGAA
>TU494320
TTACACTCGAATGGATTTTATTGGTGGTAAAAGAGAAGTACAACTTGTGGAAGCGTAAAAAAGAGATTTGTGAAATATTATCCTGAAAGTCTAAATGGCATTAAATACAAAACACATTATTTCCATCAACATGTAATTGAGTAAATGTACAAGCATTCAATTACAATAATACACAAATATACTTTAGTAATGAAGTATAATAACTCAAGTACTTTACAGCCCTCAATATGAACATTATTATTCAGAAACTTGGCAGCTTGTGCAGTTTCAACACACCTCAGAGTCTACAAATGCCATTTTTAATCCAATCTCATTGTTGTAGGTCGATGTACAAAACTGGTTTTTGTGGTTGTTGACAACATTCCTCATTCACCAGCCAATATGCAAATCCTGCGATGGCAGAGAAACAGGAATAGGAGTATTTTTGTTGTTCTATTTTAAAAGGCAAAACACTGGTAATGCAAACCACACAGTCACATCATCATGAAGGGCCACACAAAACCTAGACCACTTTGTCATTTGTTTGTCTTTCTGGCCAGAAACTGCACAGGAATAGACAAAAATTAGGAAAGCTTTCGAGTTCATTAAAGGAAGATTTTCACTCAACTGCCGACAAGCACTAACCCAAGTAACCTTGTAAACTTGTACAACTGCAGGTCAAGATGTGCAGTGAGTTCAAAACATCTCGTTGGGTCATCAAGGTCAAACAAAAACAAACGCCCGACCTGTAGATCATTAACTTTCCTCGTCTTAGTTTATGACAAATTGACCAGAGATAACATGGTATTACTGTCTAACCTAATTTGTAAAAAGTTGACTTTGCCCTAAAATGAAGAATCTTATGAGAACATTGCCCGGGTCACAAATAAACTAAACTAAACTAAAAATAATCCTATTTTTGGGACCATTATGTTTTTATGCATTATTTAGTGTACACAGGTACATTTGCCTCATTACTGCAATGCAAAACAAAATAAATAAATATAAACAAATCTAAAATAAATATATTTTATTATAGCATGCACAGATTTTTTATATAAATACATAGTTACAAGACAAAAAAAAAATTACTGGCATACTTTTATAATTCAC
>TU494321
GCTTCAGTAACCGCCTCATAAACTAAACCTGAGACTAACAAATCTATTGTGTCTGTGTCCTTTGCACTTATGTCTGCCCTGACCGCCTTCTATCCCACAATGCTCCTCTGTTCAGAGGTCGTCCCGGGAGAACGGCACATAAAGGACGTGAAGCCTATATCACAAGGTTCATATAACACTGTGACCGAAGCGAAGAGTCTCGAGTCCACGGCAGAAGTGGAGAAAGAGGTTTCCTCACTCGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_01429843_01430151.mRNA False 1463 mRNA 0.38 1 1428813 1430275
TU494320 False 1092 lncRNA 0.33 1 1427779 1428870
TU494321 True 243 lncRNA 0.49 1 1429774 1430016

Neighbor

gene id symbol gene type direction distance location
CI01000306_01387861_01391135 NA coding upstream 36492 1387602 ~ 1392321 (+)
CI01000306_01329678_01378388 EML6, EML5 coding upstream 50303 1329678 ~ 1378510 (+)
CI01000306_01315927_01321358 NA coding upstream 106519 1315532 ~ 1322294 (+)
CI01000306_01308428_01312462 SPTBN1 coding upstream 115943 1308428 ~ 1312870 (+)
CI01000306_01293889_01308316 SPTBN1 coding upstream 120497 1293668 ~ 1308316 (+)
CI01000306_01481595_01481955 NA coding downstream 51320 1481595 ~ 1482496 (+)
CI01000306_01578460_01578838 NA coding downstream 148185 1578460 ~ 1579027 (+)
CI01000306_01627469_01632656 RFC4 coding downstream 197194 1627469 ~ 1632729 (+)
CI01000306_01639496_01661857 ANKRD13C.S, ANKRD13C, ANKRD13C.L coding downstream 208790 1639065 ~ 1663148 (+)
CI01000306_01679537_01704400 NA coding downstream 249262 1679537 ~ 1704951 (+)
G430509 NA non-coding upstream 13207 1415207 ~ 1415606 (+)
G430504 NA non-coding upstream 20253 1408330 ~ 1408560 (+)
G430502 NA non-coding upstream 21564 1407030 ~ 1407249 (+)
G430499 NA non-coding upstream 28980 1399618 ~ 1399833 (+)
G430498 NA non-coding upstream 31636 1396913 ~ 1397177 (+)
G430515 NA non-coding downstream 814 1431089 ~ 1431487 (+)
G430161 NA non-coding downstream 6820 1437095 ~ 1439973 (+)
G430533 NA non-coding downstream 73114 1503389 ~ 1503601 (+)
G430534 NA non-coding downstream 76354 1506629 ~ 1506862 (+)
G430133 NA non-coding downstream 98877 1529152 ~ 1531757 (+)
CI01000306_01209847_01210850 ACYP2 other upstream 210256 1209395 ~ 1211232 (+)
G430452 NA other upstream 277875 1150597 ~ 1150938 (+)
G430409 NA other upstream 428911 925544 ~ 999902 (+)
CI01000306_00235686_00242814 NA other upstream 1191444 235447 ~ 242861 (+)
G430719 NA other downstream 718107 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 1542881 2973156 ~ 2979157 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 2343869 3772689 ~ 3777550 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other downstream 2347777 3778052 ~ 3783019 (+)
CI01000306_03807268_03810946 NA other downstream 2377958 3807268 ~ 3811243 (+)

Expression


Co-expression Network