CI01000306_01627469_01632656 (RFC4)


Basic Information

Item Value
gene id CI01000306_01627469_01632656
gene name RFC4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1627469 ~ 1632729 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_01627469_01632656.mRNA
CAGACCAAAGTGTGTGGATGAAGTGGCCTTTCAGGAGGAGGTGGTTGCAGTACTGAAGAAATCTCTAGAGGGCGCTGATCTGCCCAACCTGCTGTTCTATGGACCTCCTGGAACAGGAAAGACGTCCACCATCCTTGCGGCCGCCAGAGAGCTTTATGGACCTGAGCTGTACCGACAGAGAGTTCTGGAGCTCAACGCATCTGATGAACGAGGAATTCAGGTGGTCCGTGAGAAGGTGAAGAACTTTGCCCAGCTGACGGTGGCCGGCTCGCGAACAGATGGGAAGCCTTGTCCGCCATTTAAGATCATCATCCTGGACGAGGCGGATTCCATGACCAACGCCGCTCAGGCGGCGCTCAGACGCACGATGGAGAAAGAGTCTCGAACCACTCGATTCTGTCTCATCTGCAACTACGTCAGCCGGATTATTGAGCCTTTGACCTCCAGATGCTCCAAGTTCCGCTTCAAACCGCTGGCCAATGACATTCAGCAGGAGCGTCTGCTGGAGATCTGTGGAAAGGAGAACCTCAAGTATAGCAAAGATGGAATCGAGGCTCTGGTCAAGGTGTCGGAAGGAGATCTCAGGAAAGCCATCACGTATCTCCAGAGCGCTGCGAGACTCAACGCTGAGCGGGAAATTACTGAACAAATCATCATCGAGATCGCCGGGGTGGTTCCACCCAAAGTGATTGAATCGCTCCTCCAGACATGTTACAGAGGTGCTTTTGAAAAGCTGGAGCTTGCTGTGAAGGATCTGATCGATCAGGGATACGCTGCAAACAATGTTCTCAACCAGTTACATGACGTCATCATTGAAGAGAAGCTGAGCGATAAACAGAAGTCTGTCATTGCAGAGAAGATGGCCGAGGTGGATAAGTGTCTGTCAGATGGCGCAGACGAGTATCTGCAGTTATTGAGTCTCTGTTCTGTCATCATGCAGCAGGCCGCACAGAACACCTGAGCCGACCAATCAGCAGCTCCGTTATCATGTGGCTGCCCAGATTTTCAACTTTTTGTACATTTGATATATGTAA

Function

symbol description
rfc4 Predicted to enable ATP binding activity and DNA binding activity. Predicted to contribute to DNA clamp loader activity. Acts upstream of or within retina development in camera-type eye. Predicted to be part of DNA replication factor C complex. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; immature eye; and nervous system. Orthologous to human RFC4 (replication factor C subunit 4).

NR:

description
replication factor c subunit 4

GO:

id name namespace
GO:0003689 DNA clamp loader activity molecular_function

KEGG:

id description
K10755 RFC2_4; replication factor C subunit 2/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_01627469_01632656.mRNA True 1034 mRNA 0.51 9 1627469 1632729

Neighbor

gene id symbol gene type direction distance location
CI01000306_01578460_01578838 NA coding upstream 48442 1578460 ~ 1579027 (+)
CI01000306_01481595_01481955 NA coding upstream 144973 1481595 ~ 1482496 (+)
CI01000306_01429843_01430151 NA coding upstream 197194 1427779 ~ 1430275 (+)
CI01000306_01387861_01391135 NA coding upstream 235148 1387602 ~ 1392321 (+)
CI01000306_01329678_01378388 EML6, EML5 coding upstream 248959 1329678 ~ 1378510 (+)
CI01000306_01639496_01661857 ANKRD13C.S, ANKRD13C, ANKRD13C.L coding downstream 6336 1639065 ~ 1663148 (+)
CI01000306_01679537_01704400 NA coding downstream 46808 1679537 ~ 1704951 (+)
CI01000306_01811531_01821737 NA coding downstream 178802 1811531 ~ 1821864 (+)
CI01000306_01854835_01855388 NA coding downstream 222106 1854835 ~ 1855560 (+)
CI01000306_01856805_01857982 NA coding downstream 223984 1856713 ~ 1858163 (+)
G430135 NA non-coding upstream 1469 1625316 ~ 1626000 (+)
G430555 NA non-coding upstream 9480 1617738 ~ 1617989 (+)
G430554 NA non-coding upstream 10055 1617074 ~ 1617414 (+)
G430549 NA non-coding upstream 33729 1593153 ~ 1593740 (+)
G430133 NA non-coding upstream 95712 1529152 ~ 1531757 (+)
G430082 NA non-coding downstream 72642 1705371 ~ 1706072 (+)
G430153 NA non-coding downstream 79968 1712697 ~ 1714250 (+)
G430569 NA non-coding downstream 131525 1764254 ~ 1764486 (+)
G430585 NA non-coding downstream 177350 1810079 ~ 1810535 (+)
G430145 NA non-coding downstream 213334 1846063 ~ 1865533 (+)
CI01000306_01209847_01210850 ACYP2 other upstream 408912 1209395 ~ 1211232 (+)
G430452 NA other upstream 476531 1150597 ~ 1150938 (+)
G430409 NA other upstream 627567 925544 ~ 999902 (+)
CI01000306_00235686_00242814 NA other upstream 1390100 235447 ~ 242861 (+)
G430719 NA other downstream 515653 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 1340427 2973156 ~ 2979157 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 2141415 3772689 ~ 3777550 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other downstream 2145323 3778052 ~ 3783019 (+)
CI01000306_03807268_03810946 NA other downstream 2175504 3807268 ~ 3811243 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location