CI01000306_01907357_01910697


Basic Information

Item Value
gene id CI01000306_01907357_01910697
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1907271 ~ 1911561 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_01907357_01910697.mRNA
TTTTAAAAACACTTCCTTGATTGGTTCTTGGCATAGATACAGCTTTGTAATTTCCGTGAGCATCGGTGTGATCTGAACGGCACAGGATGATCATTCTCAGGACAGAGGAACTCGAACAAGCTGAGAGCGTTTTGAAGCAGTTTTTTCCCGAGTCCATCAAGGGCACAAAGGATCGAGAAGGAGATTTCAACATTTACAGCATCTACTCAAAGAGCAAAGACAGCCTGAGGAAGTTTCTGGACACACCTGGTGTGATCAATAAAGACTCATTCACATTATTGGCAGGGGTTGACATCAAGCATTTAGAAGCGGTTCAGGAGTTTGCGGATCAACATGGACTTCCTTGGAAAGTACAAGTAGTGATGAATGTGTTAATGCTTCAGGATGCAAACCAGCTGCGGTTTAAACAGAGTTCAGCAGGTCTCAGATTTTCTCCGCTCAGCGAAGCTCAAGCACATCTGGTGAACAGCACATGGAAGTATGGAGGAGACAGTAACAGCTACAACTCAGTGCTGAACTACATCTCCCATAATCCTTCACTGTGCGTAATCGAGGAGGGCGCCACCGAGCCCGTCTCTTGGCTGCTTGTGTACCAACACGCTGCTCTTGGTTTACTCTATACGTTACCACAACACAGACGTAAAGGCTACGCCAAGTTACTGGTGTCTATCATGGGCAAATCCCTCCTGGAGCGAGGACACCCTGTGTACTGCTTCGTGGAAGAGGAAAATGACACTTCCTACAAGCTTTTCACATCACTGGGGTTCCAGCATTCACAGGGTTACAGGGCGGTGTGGTTTGAGCTCAATAAACGAGAGGACAAGAAATAGAAATGCAAATCACTTCAAATGTCATTCTGGAGTTTTTAATTACTTCATTATTTGTAATATAATTTATTTATATTACGCTCGGTTCTTGGTTGTTCTCCTTCTGTCTTTTCTCCGCAAAATACTTCAGACCTTTGGAGCAGACGGTGATGATGAAGTGAGCCTCATTGATACGCCGGCTCAGCCAAGCCATCTGACCCTCCTTACAGATCTCCAGATGTTCCCAGAGATCCAGAGACACCTGCACATCCAAACACACACATTCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATATATATAGTAATAATACTATTGTACAGAAGCATTTAATAATAATATTATTAATAATAATAATAAACTAATCA

Function

NR:

description
LOC799646 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_01907357_01910697.mRNA True 1694 mRNA 0.30 4 1907271 1911561

Neighbor

gene id symbol gene type direction distance location
CI01000306_01887307_01897613 NA coding upstream 9290 1887068 ~ 1897981 (+)
CI01000306_01885017_01886202 NA coding upstream 20677 1884918 ~ 1886594 (+)
CI01000306_01880262_01881242 NA coding upstream 25833 1880188 ~ 1881438 (+)
CI01000306_01871685_01875161 NA coding upstream 31970 1871570 ~ 1875301 (+)
CI01000306_01856805_01857982 NA coding upstream 49108 1856713 ~ 1858163 (+)
CI01000306_02082508_02100892 DENND6AA, DENND6A coding downstream 170947 2082508 ~ 2100892 (+)
CI01000306_02109241_02110274 ARF4B coding downstream 197565 2109126 ~ 2110875 (+)
CI01000306_02112910_02114040 ARF4B coding downstream 201254 2112815 ~ 2114420 (+)
CI01000306_02116775_02121990 ARF4A, ARF5, ARF4 coding downstream 204811 2116372 ~ 2122477 (+)
CI01000306_02140523_02142280 RS23, RPS23.L, BRAFLDRAFT_130085, RPS23, RPS23-PS2 coding downstream 227934 2139495 ~ 2142301 (+)
G430599 NA non-coding upstream 627 1905477 ~ 1906644 (+)
G430605 NA non-coding upstream 2924 1903119 ~ 1904347 (+)
G430603 NA non-coding upstream 8164 1898865 ~ 1899107 (+)
G430598 NA non-coding upstream 23844 1878381 ~ 1883427 (+)
G430145 NA non-coding upstream 41738 1846063 ~ 1865533 (+)
G430611 NA non-coding downstream 24024 1935585 ~ 1989749 (+)
G430632 NA non-coding downstream 92141 2003702 ~ 2029292 (+)
G430739 NA non-coding downstream 247901 2159462 ~ 2192381 (+)
G430745 NA non-coding downstream 359216 2270777 ~ 2285286 (+)
CI01000306_01209847_01210850 ACYP2 other upstream 688714 1209395 ~ 1211232 (+)
G430452 NA other upstream 756333 1150597 ~ 1150938 (+)
G430409 NA other upstream 907369 925544 ~ 999902 (+)
CI01000306_00235686_00242814 NA other upstream 1669902 235447 ~ 242861 (+)
G430719 NA other downstream 236821 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 1061595 2973156 ~ 2979157 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 1862583 3772689 ~ 3777550 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other downstream 1866491 3778052 ~ 3783019 (+)
CI01000306_03807268_03810946 NA other downstream 1896672 3807268 ~ 3811243 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004361 si:ch73-106k19.2 coding NC_007122.7 CM002895.2 42720203 ~ 42730063 (-)