CI01000306_02140523_02142280 (RS23, RPS23.L, BRAFLDRAFT_130085, RPS23, RPS23-PS2)


Basic Information

Item Value
gene id CI01000306_02140523_02142280
gene name RS23, RPS23.L, BRAFLDRAFT_130085, RPS23, RPS23-PS2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 2139495 ~ 2142301 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_02140523_02142280.mRNA
GCATAAAAAAGATCAATTATTAATAATAAACACGCATCAGGCTCATTTATATAATAAATAAATGATACATAATGTGATTCTCCAGCTTGATTCTACACGTTTTAGGTGATGTTTAGCCCAACAATATGAAAAAAAATTCTATTTCATATTTCATTCATATCATCAACAGCATGACATCAGAAGGATGCTCCACATTCCTGACATTCCTTCAGTGATGCTGATCATTCCTGAATCCCAACCTGCTCTCATCTTATCTAACACACATCTTTGCCTCCAATTATAGTAGCAAATATGGATTTGCCCTGTAAACTGATGCCGATGGATTTTCTCTTGTGTTTCACTGCAAGAGCCCTTCAGTTGAGTCTCAATGCAGACACAATGTGCATGAAGGGTGGACAAAGGAAGCAAGCACTAGTTTGTCTCTGCCACACCAGTTCATCGTCATTTAATAAACGCATAGGCTATTAAAGATTCACAGTATAGCCTATATAGTCTTTGTTTTTCACCATCTGAATAAATGGGATGCATAAAACACCACATCTCTGGCTTATTTCGAAATAACTCACTCACCTTCCTTCCACAAAGGCAGACAGCTGCTCATAAGACGAGGATATCTGCAGGAAAACAAAGGAAAATAACGCAAGCCACGTTGATGCCATGTATACATCCAGATGAGTCTGCCAGAGATGATGCTGAACACTGCTGCTTCATAATCTGCCTGGATAACAGGGCGCAACCTCAGCCGATGATTGACAGGCGCGGCGACCAATCAGCGTGCAGTGGGCGGGTTAATCCAGCGACACGGCCACGCCCGTTCAGAGAGCGTGTGCTGCTGACACAGTAATACACAAACCAGCAGGAGATATAAGCGACTGATCCATAAACCTAAACTAATTAGCCAAATAATTAACGGATATAAGACAATGGTATTGATTGTGAACTGTGGCAGAAGGTCGAATAATGCTCTTTCTGCATTATTTTGCATGTGTGTGACCTACATTACACTGTAGTGCACATTAATTGGCAGCATGTGTAAGAAATACATGAAGAAAATGGTGTTTTGGCCTTTTCTAGACAAACTAACGAATCCCAAACAAAGAAACATCCTTTCTATCATAATTTATGTTTGTCAACCCGCACTTGATAAGAAACTAGTAAAAGCGCTCGCTTTGTCAACCCGCGGGGTCCTTCCAGCAGTCATTTGCGCAGAGCGTCACGTGATCGTTCTTTCCTGTCCGGACTCAGAGCACGCGATCATGGGCAAGTGTCGTGGACTGCGTACTGCTAGAAAACTGCGGAACCACCGCCGCGAGCAGAAATGGCATGATAAACAGTACAAGAAGGCTCATTTGGGTACCGCTCTGAAGGCCAACCCCTTCGGTGGAGCTTCTCACGCCAAAGGCATTGTGCTTGAGAAAGTTGGTGTTGAAGCCAAGCAGCCCAACTCTGCCATCAGGAAGTGCGTCAGGGTCCAGCTGATCAAGAACGGCAAGAAGATCACAGCTTTCGTGCCCAACGACGGCTGCTTGAATTTCATCGAGGAAAACGATGAGGTTCTGGTGGCAGGATTCGGTCGTAAGGGACACGCCGTGGGTGATATCCCTGGTGTTCGTTTCAAGGTGGTGAAGGTGGCCAACGTTTCTCTTCTGGCTCTGTACAAAGGCAAGAAGGAGAGACCCAGATCATAAACTGTTCTTGGTGAAATCACA

Function

symbol description
rps23 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in ribosome. Orthologous to human RPS23 (ribosomal protein S23).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K02973 RP-S23e, RPS23; small subunit ribosomal protein S23e

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_02140523_02142280.mRNA True 1709 mRNA 0.44 5 2139495 2142301

Neighbor

gene id symbol gene type direction distance location
CI01000306_02116775_02121990 ARF4A, ARF5, ARF4 coding upstream 17018 2116372 ~ 2122477 (+)
CI01000306_02112910_02114040 ARF4B coding upstream 25075 2112815 ~ 2114420 (+)
CI01000306_02109241_02110274 ARF4B coding upstream 28620 2109126 ~ 2110875 (+)
CI01000306_02082508_02100892 DENND6AA, DENND6A coding upstream 38603 2082508 ~ 2100892 (+)
CI01000306_01907357_01910697 NA coding upstream 227934 1907271 ~ 1911561 (+)
CI01000306_02156224_02158555 ASB14 coding downstream 13923 2156224 ~ 2158721 (+)
CI01000306_02160784_02174325 APPL1 coding downstream 18483 2160784 ~ 2175204 (+)
CI01000306_02177474_02180692 HESX1 coding downstream 35105 2177406 ~ 2180840 (+)
CI01000306_02183898_02186529 NA coding downstream 41597 2183898 ~ 2186776 (+)
CI01000306_02204158_02222866 IL17RD coding downstream 61626 2203927 ~ 2222866 (+)
G430632 NA non-coding upstream 110203 2003702 ~ 2029292 (+)
G430611 NA non-coding upstream 149746 1935585 ~ 1989749 (+)
G430599 NA non-coding upstream 232851 1905477 ~ 1906644 (+)
G430605 NA non-coding upstream 235148 1903119 ~ 1904347 (+)
G430739 NA non-coding downstream 17161 2159462 ~ 2192381 (+)
G430745 NA non-coding downstream 128476 2270777 ~ 2285286 (+)
G430805 NA non-coding downstream 210410 2352711 ~ 2352939 (+)
G430811 NA non-coding downstream 243983 2386284 ~ 2386558 (+)
G430834 NA non-coding downstream 339805 2482106 ~ 2483041 (+)
CI01000306_01209847_01210850 ACYP2 other upstream 920938 1209395 ~ 1211232 (+)
G430452 NA other upstream 988557 1150597 ~ 1150938 (+)
G430409 NA other upstream 1139593 925544 ~ 999902 (+)
CI01000306_00235686_00242814 NA other upstream 1902126 235447 ~ 242861 (+)
G430719 NA other downstream 6081 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 830855 2973156 ~ 2979157 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 1631843 3772689 ~ 3777550 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other downstream 1635751 3778052 ~ 3783019 (+)
CI01000306_03807268_03810946 NA other downstream 1665932 3807268 ~ 3811243 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003699 rps23 coding NC_007122.7 CM002895.2 42556395 ~ 42561215 (+)
bowfin (Amia calva) AMCG00017013 rps23,rs23,LOC106566095,LOC107680479 coding CM030122.1 CM030122.1 41939367 ~ 41941609 (-)