CI01000306_02177474_02180692 (HESX1)


Basic Information

Item Value
gene id CI01000306_02177474_02180692
gene name HESX1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 2177406 ~ 2180840 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_02177474_02180692.mRNA
CTATAAAGACCAACCTCAAGCTTTCAGATCACACCAGTAAAGGTCCAGTCGGAGAAGAAGAGCATCAGATGGCGTCTCTCACAGTCAGCGCGCATCAGAACAGCCCGATGAACAGACAGTCCGCGTTCACCATAGACAGCATCCTGGGACTGAACAGACCGGATCAGAGAACAGCGCTGTCAGCACCTTACCGACCCTGGACAGACGTGAAACCAGCATGCCAGAATCGTCGCGTGGTGACAGACAGTGAAGCTTCAGTGGATGTGAGAGTGAATGAAGATGGTAAATCTTACAGTAAATCACCAGCAGACTCGTACAGGAGAACACTGAACTGGTACATCGGGCGCAGGCCGCGGACGGCGTTCTCTAGCGTTCAGATCAAGATATTGGAGAGTGTGTTTCAAGTGAACTCATACCCGGGCATCGATATACGTGAAGAACTTGCTAAGAAACTTCATCTAGATGAGGACAGAATTCAGATTTGGTTCCAGAACAGAAGAGCAAAGCTGAAGCGCTCACACAGAGAGTCTCAGTTTCTCATGGTGAAAAATGTCCTTAATGATTTACAAACCAGCAGGGAAGAACGCTGACTGTCACATTTTATCATATTATTTCTATCTCTCTGCCTCTGTTGCGATATTGTAATTTATTATATGTCTTTACCACTTATGTAATTAATAATTATCTCTCACTATGTTTTAAATGCTAAATGTGTGTGTTTACTGAAAATATAAAATA

Function

symbol description
hesx1 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within forebrain development. Predicted to be located in early endosome membrane; phagocytic vesicle; and ruffle. Predicted to be active in nucleus. Is expressed in anterior presumptive neural plate; neural keel; neural plate; and telencephalon. Human ortholog(s) of this gene implicated in septooptic dysplasia. Orthologous to human HESX1 (HESX homeobox 1).

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09354 HESX1; homeobox protein expressed in ES cells 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_02177474_02180692.mRNA True 738 mRNA 0.44 4 2177406 2180840

Neighbor

gene id symbol gene type direction distance location
CI01000306_02160784_02174325 APPL1 coding upstream 2202 2160784 ~ 2175204 (+)
CI01000306_02156224_02158555 ASB14 coding upstream 18685 2156224 ~ 2158721 (+)
CI01000306_02140523_02142280 RS23, RPS23.L, BRAFLDRAFT_130085, RPS23, RPS23-PS2 coding upstream 35105 2139495 ~ 2142301 (+)
CI01000306_02116775_02121990 ARF4A, ARF5, ARF4 coding upstream 54929 2116372 ~ 2122477 (+)
CI01000306_02112910_02114040 ARF4B coding upstream 62986 2112815 ~ 2114420 (+)
CI01000306_02183898_02186529 NA coding downstream 3058 2183898 ~ 2186776 (+)
CI01000306_02204158_02222866 IL17RD coding downstream 23087 2203927 ~ 2222866 (+)
CI01000306_02230144_02236022 ZC3H11A coding downstream 49304 2230144 ~ 2236982 (+)
CI01000306_02238316_02241601 MAF1 coding downstream 57476 2238316 ~ 2242400 (+)
CI01000306_02263738_02279937 NA coding downstream 82778 2263618 ~ 2280012 (+)
G430632 NA non-coding upstream 148114 2003702 ~ 2029292 (+)
G430611 NA non-coding upstream 187657 1935585 ~ 1989749 (+)
G430599 NA non-coding upstream 270762 1905477 ~ 1906644 (+)
G430605 NA non-coding upstream 273059 1903119 ~ 1904347 (+)
G430745 NA non-coding downstream 89937 2270777 ~ 2285286 (+)
G430805 NA non-coding downstream 171871 2352711 ~ 2352939 (+)
G430811 NA non-coding downstream 205444 2386284 ~ 2386558 (+)
G430834 NA non-coding downstream 301266 2482106 ~ 2483041 (+)
G430931 NA non-coding downstream 703051 2883891 ~ 3238771 (+)
G430719 NA other upstream 26452 2148382 ~ 2150954 (+)
CI01000306_01209847_01210850 ACYP2 other upstream 958849 1209395 ~ 1211232 (+)
G430452 NA other upstream 1026468 1150597 ~ 1150938 (+)
G430409 NA other upstream 1177504 925544 ~ 999902 (+)
CI01000306_00235686_00242814 NA other upstream 1940037 235447 ~ 242861 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 792316 2973156 ~ 2979157 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 1593304 3772689 ~ 3777550 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other downstream 1597212 3778052 ~ 3783019 (+)
CI01000306_03807268_03810946 NA other downstream 1627393 3807268 ~ 3811243 (+)
G432583 NA other downstream 2145562 4326402 ~ 4327822 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003702 hesx1 coding NC_007122.7 CM002895.2 42600731 ~ 42635440 (+)