CI01000306_02238316_02241601 (MAF1)


Basic Information

Item Value
gene id CI01000306_02238316_02241601
gene name MAF1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 2238316 ~ 2242400 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_02238316_02241601.mRNA
ATGAAGCTCCTGGAAAACTCAAGTTTTGAGGCCATAAACAGTCTGCTCACTATTGAAACGGGAGACTGCAAGATAATTGGACGCATTGAGAGCTACTCCTGTAAGATGGCTGGTGATGACAAGCAGATGTTTAAGCAGTTTTGCCAGGAGGGGCAGCCGCACGTGCTGGAAGCTCTGTCTCCTCCACAGAGCTCTGGAATCAGCCCCAACAAACTGAGTCAGAGTTTGGATGATGGGGAGGGTCCTCTCTCAGATAAGTGCAGCAGAAAGACTCTCTTTTATTTGATCGCCACTCTCAATGAATCCTTCCGGCCAGACTATGACTTCAGTCGCACCAAAGGCCATGATTTCAGCAAGGAGCCCAGTGTTAATTGGGTGTTTAATGCAGTGAACAGCAGTTTGTCTGCCGCTGCGGGTGAGGCGTACAGTCACCTACAGCCTCAGTTATGGGAAGCCCTAGACAAGGAGATCAGCCTCGCTGAATGTGACATATACAGTTACAATCCTGACCTGGATTCAGACCCATATGGGGAAGAAGGCAACCTGTGGTCCTTCAACTACTTCTTTTATAACAAAAGACTGAAGAGGATTGTGTTCTTCACATGCCGTTCTGTCAGTCTTTTCATGGCTCCACGAGACTCTGGCATCGGCACAGAATTGGATCTGGAGTTGGATGAGGGCAGCTATGAGGAAGAGGAAGAGGGGAACATGGATGAAGAGAGGTATGGTGCACTGTGTGCCTGATGAAGCCCTCGTCCCTGTCCTCTGAAGCCAGCAATCTCTTGCCTGAGTTTTTATGCCTGTTAATCTTTTCTGTTTCTTATGTGTTCAATTTTATATTGTCGGTCATTGTTAGGAATGTTGTAAGGAGAGATGTTGTAATCCAGAGATTTACAAGTGCTATTCATTGCACTTTAACATTTACTTTGCATTGCATTCACTAGACTTACCTCTGACACTGGCCTTGGAGGGAACAAGCGTGACATGTTTTTACTGTCTTTTCTTTTTTATTTGTCTCTGAGAGTAAGTTGAATTATGCAGTTGTTTTACTTTCCCTCTCGTCCCCCCAAACCTCATTTATTTATTCATGTTCATTATTTCCACTAGTTTTTATGTCTCCATAAACGTCACAGTATTTCCACTAGGTGGCATATTTCAACATATCATCATCTTTGCCTCCTGTCTCTGCACTTCATTGGCATTTTGAGCAATGAAATGAGAAGATTGTACATCATAGTTCACATTTAAATGTTTAATTCCAGTTTCCATATTTGTTAGGCCTACACCATTTTTTTTTTTTTTTATTATATATATATATATATATATATATATATGAAGTTTTCCCTGTTCCCCCCCCCCTTCTTTTAATGATAATAGAACTACATAGATGAGTGTTTGTTTTTAGGCCTTAATACATTTTCCTGCAACTTTCTTGCCTCAGGAAAAATATATAAACAGAGAACAGCGTAAACGTTGCCCAGTAGATTTACTAATGCGTTGACCTACGGATCAACCTCCCTTTTTAGTTTTACCCCCAAAGCTA

Function

symbol description
maf1 Enables RNA polymerase III type 1 promoter sequence-specific DNA binding activity; RNA polymerase III type 2 promoter sequence-specific DNA binding activity; and RNA polymerase III type 3 promoter sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase I and negative regulation of transcription by RNA polymerase III. Located in nucleolus and nucleoplasm. Part of cytoplasm. Is active in nucleus.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_02238316_02241601.mRNA True 1543 mRNA 0.42 7 2238316 2242400

Neighbor

gene id symbol gene type direction distance location
CI01000306_02230144_02236022 ZC3H11A coding upstream 1334 2230144 ~ 2236982 (+)
CI01000306_02204158_02222866 IL17RD coding upstream 15450 2203927 ~ 2222866 (+)
CI01000306_02183898_02186529 NA coding upstream 51540 2183898 ~ 2186776 (+)
CI01000306_02177474_02180692 HESX1 coding upstream 57476 2177406 ~ 2180840 (+)
CI01000306_02160784_02174325 APPL1 coding upstream 63112 2160784 ~ 2175204 (+)
CI01000306_02263738_02279937 NA coding downstream 21218 2263618 ~ 2280012 (+)
CI01000306_02354432_02358965 PNP4A coding downstream 110781 2353181 ~ 2359501 (+)
CI01000306_02359989_02366944 NA coding downstream 117589 2359989 ~ 2366997 (+)
CI01000306_02369579_02380912 REM1, GEM coding downstream 127179 2369579 ~ 2381322 (+)
CI01000306_02389329_02392416 RBM39, RBM39A, RBM39B coding downstream 146929 2389329 ~ 2392960 (+)
G430739 NA non-coding upstream 45935 2159462 ~ 2192381 (+)
CI01000306_02112910_02114040 ARF4B non-coding upstream 124214 2112815 ~ 2114420 (+)
G430632 NA non-coding upstream 209024 2003702 ~ 2029292 (+)
G430611 NA non-coding upstream 248567 1935585 ~ 1989749 (+)
G430599 NA non-coding upstream 331672 1905477 ~ 1906644 (+)
G430745 NA non-coding downstream 28377 2270777 ~ 2285286 (+)
G430805 NA non-coding downstream 110311 2352711 ~ 2352939 (+)
G430811 NA non-coding downstream 143884 2386284 ~ 2386558 (+)
G430834 NA non-coding downstream 239706 2482106 ~ 2483041 (+)
G430931 NA non-coding downstream 641491 2883891 ~ 3238771 (+)
G430719 NA other upstream 87362 2148382 ~ 2150954 (+)
CI01000306_01209847_01210850 ACYP2 other upstream 1019759 1209395 ~ 1211232 (+)
G430452 NA other upstream 1087378 1150597 ~ 1150938 (+)
G430409 NA other upstream 1238414 925544 ~ 999902 (+)
CI01000306_00235686_00242814 NA other upstream 2000947 235447 ~ 242861 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 730756 2973156 ~ 2979157 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 1531744 3772689 ~ 3777550 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other downstream 1535652 3778052 ~ 3783019 (+)
CI01000306_03807268_03810946 NA other downstream 1565833 3807268 ~ 3811243 (+)
G432583 NA other downstream 2084002 4326402 ~ 4327822 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003439 maf1 coding NC_007122.7 CM002895.2 24046179 ~ 24056609 (+)