CI01000306_02591160_02596388 (SYT6)


Basic Information

Item Value
gene id CI01000306_02591160_02596388
gene name SYT6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 2591160 ~ 2597618 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_02591160_02596388.mRNA
ACATTTCCTTCAGTCTCCTGCTGCTTGTATTTGCGGTGTGTGGTTTGGCCCTGCTGGGTGTCATCAGCGTCGCCACCTGGAAGCTGTGCTGGGTGCCCTGGCGCAGCAAAGTGCTTTCCTTTAGCACCACCGCCCTTGCCCCCACCCGGCCAGAGAGAGACCAACACAGAGAAGAAGGTCACAGTGACTACTACCCAGCCCTAGGAGACATTATGGCAGCAGACAAGCTGAAAGATCCTGGGAACTTTCTGGAGGCGGCAGTGAAGATTAGTCATACGTCGCCAGATATCCCTGCAGACGTGCAGCTGTCCATGAAGGATCATCTACTGAGACGTACACGTATTTCACGGCAAACAACCGAGCCGACCTCCTCTAACAGGTCAGTGTTCTGGAAGAATGAAGAAATGTTTGTGTCTGAAGACCTTTATATAGGTCATCATGATTTACTGTATATACAAAGCCGTTATGAGATTAGCACCTGGTGTGCTTTTTGTGAAAGAACCAATGCATCAGATCAGGATGCCAAATTTTGTCTGATTGTTGCCAGGCATAGTTCCTTCAAGAAGCACCTTCCCAGGCAGATGCACCATGTCACCAGTCTGGACCGCGGAAGTGAATTTTTAGACGTGGAGGACCATCCCACCTGCACCGCTGCCTCTCTTGGACGCATCCAACCGGAACTCTACAAACAGAGCACGGTGGAGGCAGAGGAGTCATCTAAGAACGGCACTGCCAAAACATGCGGCAAGATCAACTTCTCCCTCAAGTATGATTATGAGGGAGAGCTCCTTCTCGTCACCATCCTCAAGGCATTCGACCTACCCGCCAAGGATTTGTGTGGCAGCTCCGATCCTTACGTCAAGATCTACCTGCTCCCCGACCGCAAGCGTAAGTTCCAAACTCGCGTGCACCGCAAGACGCTCAACCCCACGTTTGACGAGACCTTTCAGTTTCCAGTCCCATATGAGGAGCTGGGGTCCAGAAAGCTTCACCTGAGCGTGTTTGACTTTGACCGCTTCTCACGGCACGATATGATTGGTGAGGTGATACTGGAAAACCTTTTTGAAGTTTCAGACCTCTCGCGGGAGACATCCATCTGGAAGGACATCCAGTACGCCACTAGCGAGAGCGTGGATCTGGGAGAGGTAATGTTCTCTCTCTGCTACTTGCCAACTGCAGGGAGACTCACACTTACTGTCATCAAATGTAGGAACCTCAAAGCCATGGATATTACCGGTTATTCAGATCCGTACGTGAAGGTGTCACTGATTTGTGATGGAAGACGCTTGAAAAAGAAGAAAACTTCCATAAAAAAGAACACATTGAATCCAACATATAATGAGGCGATTATCTTTGACATTCCCCCAGAGAATATGGATCAAGTCAGCTTACACATATCAGTTATGGACTACGATCTAGTGGGCCATAATGAGATCATTGGAGTCTGCCGTGTAGGGATCCATGCTGAGGGACTTGGGAGAGATCACTGGAATGAGATGCTCGCTTACCCTCGAAAACCCATCGCTCATTGGCACCCGCTTGTAGAGCCCAAGAAGTCTGAGAAGGAGTGGAAGACTCGTACCGCAAGCTTTGACAGTCAGGGGTCTTGTCCATCCCCCAGACTCCCCTCCAGTCCATAAGGGAGGGATGGCCTCTCCCTAATTCTTTAAGCCAAGTATCTCCCAGGGACTGATGGTGAGATTCAAAATATGTCCTTAGGCAACATGTGACACAACTTATGTCTGTGTGGACATGCAGCAGGAAGAAAGAGGGTGCTGTTCTAAACTTTTCAAAGTGCAACCGAGCCTAGCCAAGTTTTAGCTTTTTCTGTTTCGATGGAAGTGTTGCTTTCTTATGTGGGGTAAATCCACAAGCCACAACCCAAAGAGGTTGAAAGATACACTTAAAGATGGTTTAAGCTCCCCTGAAGAGTAAAAGGGTGCATTTGTTCATTTATATTGTATAATTAGTAGATGTACATTATATTTTAATTGACATTATAATAGTACGAAGATATAGTTTATTATATATTTAGCCATAATCCTTCTAGTTCTTTTTTGTCTTCTTTGAATGTAAAATATATGTGTTAAGAGATTTTTATGACTGGAGACATATGTGAAGTCCTCAATATGTTCAACCTATTGAAATATATTAGCCGAACTGTATATTGTTTACAGAGCAGAGATATTCCATTGATCTTCCTTTTGTTTGTGAAGTAGTGAATCTGTTCTGCCACCAAAAATGCCAATGCCAAGAATTATTTTCATCCTGTCTGCAAATATCTCTTCCTGTGTAAACTGTAAAGGTTTAGCTTTGTTCTTATTTAAACATTTAAGTTGCTGATTGTTCAATGAGTATTTTAAATAATTTTCTTAGATCAAGTTCAGCTCAGTTAAATGCAGCCATGCACAGCTTTATCCTGGATCATCCATAATGTACAACAGTCATCATAATTTCATCATGCAGTAATTGTAGCTTCCAAAGTATAACCATAATGAATAGCAAGGGTTGTGTGTCAGATCCAAAGGACGCAAAAATCACTGGCTTTCTAACAAGACTTGAAATTACATCATTATGTAAATTAGAAGCACTGTTTTACAAAGACCAGTTTTGTATTTTACATAAAATGTGACAGATGTTCATTGTTCTGTATTTTTCGTGTTATACCCTTGAGGTGTTTTCTCATCAGATAACATGATGTATTTTGTTGGCTGGCCTGGCTGGAACTCACTGTATCAATAATCATTGAAACTGGTGTTTCTGTATGAAATGCCTTATTCAGAGCCACTTTTCCCCTTTTATATTGAGAATTTGTATTTGTAATGTATATTTACTGTTTCAGAACATCCCCTTGTACTTCAAAGGTGTGA

Function

symbol description
syt6 Enables clathrin binding activity and syntaxin binding activity. Involved in acrosomal vesicle exocytosis. Predicted to be located in cytosol and perinuclear endoplasmic reticulum. Predicted to be extrinsic component of membrane and integral component of membrane. Predicted to be active in exocytic vesicle; glutamatergic synapse; and plasma membrane. Predicted to be integral component of synaptic membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_02591160_02596388.mRNA True 2870 mRNA 0.43 6 2591160 2597618

Neighbor

gene id symbol gene type direction distance location
CI01000306_02552479_02576156 NA coding upstream 14624 2552100 ~ 2576536 (+)
CI01000306_02398383_02404841 NFS1 coding upstream 186257 2397867 ~ 2404903 (+)
CI01000306_02389329_02392416 RBM39, RBM39A, RBM39B coding upstream 198200 2389329 ~ 2392960 (+)
CI01000306_02369579_02380912 REM1, GEM coding upstream 209838 2369579 ~ 2381322 (+)
CI01000306_02359989_02366944 NA coding upstream 224163 2359989 ~ 2366997 (+)
CI01000306_02614704_02617766 NA coding downstream 16914 2614532 ~ 2618085 (+)
CI01000306_02626856_02627986 NA coding downstream 28975 2626593 ~ 2628184 (+)
CI01000306_02643806_02653170 NA coding downstream 46188 2643806 ~ 2653422 (+)
CI01000306_02654091_02663519 RNPEP coding downstream 56473 2654091 ~ 2663694 (+)
CI01000306_02664578_02669105 NA coding downstream 66960 2664578 ~ 2669237 (+)
G430834 NA non-coding upstream 108119 2482106 ~ 2483041 (+)
G430811 NA non-coding upstream 204602 2386284 ~ 2386558 (+)
G430805 NA non-coding upstream 238221 2352711 ~ 2352939 (+)
G430745 NA non-coding upstream 305874 2270777 ~ 2285286 (+)
G430739 NA non-coding upstream 398779 2159462 ~ 2192381 (+)
G430931 NA non-coding downstream 286273 2883891 ~ 3238771 (+)
G430690 NA non-coding downstream 438450 3036068 ~ 3054700 (+)
G430951 NA non-coding downstream 452279 3049897 ~ 3050294 (+)
CI01000306_03048314_03055936 NA non-coding downstream 455394 3048314 ~ 3056098 (+)
G430716 NA non-coding downstream 501026 3098644 ~ 3099359 (+)
G430719 NA other upstream 440206 2148382 ~ 2150954 (+)
CI01000306_01209847_01210850 ACYP2 other upstream 1372603 1209395 ~ 1211232 (+)
G430452 NA other upstream 1440222 1150597 ~ 1150938 (+)
G430409 NA other upstream 1591258 925544 ~ 999902 (+)
CI01000306_00235686_00242814 NA other upstream 2353791 235447 ~ 242861 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 375538 2973156 ~ 2979157 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 1176526 3772689 ~ 3777550 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other downstream 1180434 3778052 ~ 3783019 (+)
CI01000306_03807268_03810946 NA other downstream 1210615 3807268 ~ 3811243 (+)
G432583 NA other downstream 1728784 4326402 ~ 4327822 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013801 LOC108433426,LOC107591076 coding CM030125.1 CM030125.1 43114300 ~ 43133761 (-)