Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000306_02672497_02676431 |
| gene name | ADR1, ADIPOR1A, ADIPOR1B, ADIPOR1 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 2672497 ~ 2676907 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| adipor1b | Predicted to enable signaling receptor activity. Acts upstream of or within retinal rod cell development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including EVL; brain; fat cell; head; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in breast cancer; macular degeneration; and prostate adenocarcinoma. Orthologous to human ADIPOR1 (adiponectin receptor 1). |
| adipor1a | Predicted to enable signaling receptor activity. Predicted to be involved in adiponectin-activated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including brain; digestive system; eye; fat cell; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in breast cancer; macular degeneration; and prostate adenocarcinoma. Orthologous to human ADIPOR1 (adiponectin receptor 1). |
| adipor1 | Enables adipokinetic hormone receptor activity; adiponectin binding activity; and protein kinase binding activity. Involved in several processes, including adiponectin-activated signaling pathway; negative regulation of epithelial cell migration; and negative regulation of signal transduction. Located in plasma membrane. Is intrinsic component of plasma membrane. Implicated in breast cancer; macular degeneration; and prostate adenocarcinoma. Biomarker of obesity. |
| adr1 | Enables several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II general transcription initiation factor binding activity; and transcription coactivator activity. Involved in chromatin organization; peroxisome organization; and positive regulation of transcription, DNA-templated. Located in nucleus. |
| id | name | namespace |
|---|---|---|
| GO:0033211 | adiponectin-activated signaling pathway | biological_process |
| id | description |
|---|---|
| K07297 | ADIPOR; adiponectin receptor |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000306_02672497_02676431.mRNA | True | 1637 | mRNA | 0.46 | 8 | 2672497 | 2676907 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_02664578_02669105 | NA | coding | upstream | 3260 | 2664578 ~ 2669237 (+) |
| CI01000306_02654091_02663519 | RNPEP | coding | upstream | 8803 | 2654091 ~ 2663694 (+) |
| CI01000306_02643806_02653170 | NA | coding | upstream | 19075 | 2643806 ~ 2653422 (+) |
| CI01000306_02626856_02627986 | NA | coding | upstream | 44313 | 2626593 ~ 2628184 (+) |
| CI01000306_02614704_02617766 | NA | coding | upstream | 54412 | 2614532 ~ 2618085 (+) |
| CI01000306_02678050_02678704 | RABIF | coding | downstream | 1143 | 2678050 ~ 2679064 (+) |
| CI01000306_02681470_02697984 | KDM5B, KDM5BA | coding | downstream | 4563 | 2681470 ~ 2697984 (+) |
| CI01000306_02699041_02741501 | IPO9 | coding | downstream | 21817 | 2698724 ~ 2742267 (+) |
| CI01000306_02752480_02764107 | NA | coding | downstream | 75421 | 2752328 ~ 2764581 (+) |
| CI01000306_02777496_02790606 | SULF2A | coding | downstream | 100495 | 2777402 ~ 2791125 (+) |
| G430834 | NA | non-coding | upstream | 189456 | 2482106 ~ 2483041 (+) |
| G430811 | NA | non-coding | upstream | 285939 | 2386284 ~ 2386558 (+) |
| G430805 | NA | non-coding | upstream | 319558 | 2352711 ~ 2352939 (+) |
| G430745 | NA | non-coding | upstream | 387211 | 2270777 ~ 2285286 (+) |
| G430739 | NA | non-coding | upstream | 480116 | 2159462 ~ 2192381 (+) |
| G430931 | NA | non-coding | downstream | 206984 | 2883891 ~ 3238771 (+) |
| G430690 | NA | non-coding | downstream | 359161 | 3036068 ~ 3054700 (+) |
| G430951 | NA | non-coding | downstream | 372990 | 3049897 ~ 3050294 (+) |
| CI01000306_03048314_03055936 | NA | non-coding | downstream | 376105 | 3048314 ~ 3056098 (+) |
| G430716 | NA | non-coding | downstream | 421737 | 3098644 ~ 3099359 (+) |
| G430719 | NA | other | upstream | 521543 | 2148382 ~ 2150954 (+) |
| CI01000306_01209847_01210850 | ACYP2 | other | upstream | 1453940 | 1209395 ~ 1211232 (+) |
| G430452 | NA | other | upstream | 1521559 | 1150597 ~ 1150938 (+) |
| G430409 | NA | other | upstream | 1672595 | 925544 ~ 999902 (+) |
| CI01000306_00235686_00242814 | NA | other | upstream | 2435128 | 235447 ~ 242861 (+) |
| CI01000306_02974291_02976718 | TP53INP2 | other | downstream | 296249 | 2973156 ~ 2979157 (+) |
| CI01000306_03772689_03777211 | DYNLRB1 | other | downstream | 1097237 | 3772689 ~ 3777550 (+) |
| CI01000306_03778075_03781910 | MAP1LC3A, MAP1LC3A.L | other | downstream | 1101145 | 3778052 ~ 3783019 (+) |
| CI01000306_03807268_03810946 | NA | other | downstream | 1131326 | 3807268 ~ 3811243 (+) |
| G432583 | NA | other | downstream | 1649495 | 4326402 ~ 4327822 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | G229872 | NA | non-coding | CI01000054 | null | 1058008 ~ 1059151 (+) |
| bowfin (Amia calva) | AMCG00013791 | adipor1 | coding | CM030125.1 | CM030125.1 | 43065336 ~ 43069921 (+) |
| mexican tetra (Astyanax mexicanus) | G192251 | adipor1,LOC107749488,LOC107385668 | unknown | NC_035918.1 | CM008321.1 | 23054633 ~ 23058805 (-) |
