CI01000306_02678050_02678704 (RABIF)


Basic Information

Item Value
gene id CI01000306_02678050_02678704
gene name RABIF
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 2678050 ~ 2679064 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_02678050_02678704.mRNA
TTTGCTTACTAACATGGATGACAGTAAACAGACCTCCTCTCCCGAGGGATCTGTAGACCCCTCTCTCGTGTCAGAAGATGGTAAAAATGTGAAATCAGTGTTGTGCCAGAGATGTTCTTCAAAAGTGCTCTGCCCAGGCATGGCAGTGATTGCAGAAAAGGAGCTGTTTCTGCCTTCAATGAGAAAGAAAACCTCCATTGGTCAGTCAGACGGAACGTTGGATGGGGACACGTTAACAGCTCACTGGCTGGTTGATGACATGTACACATTTGAGAATGTGGGGTTCACAAAAGATGTAGGCAAAGTGAAGTACCTTATTTGTGCGGATTGTGAGATTGGACCCATTGGTTGGCATTGCCTGGATGACAAGAAGAGCTTCTATGTGGCATTGGACAGGGTGAACCACGAATAGTCACTGTTTGGAGAAATTCTATAGTATTTGACTATGTAACTCAAATGGCTTCCTTGTTTGGGGTCTTGTTTTTTGCTCTCTTCACAGAGTTCTGAAAAGTTTTTGTATAGTTTTTTATTGTGACGTTTTCATTTTCACTGCTAACATGTACACATGTCTAACATCATAGTCTGCCATAGATGAATGGAGACGATCGTTTTAAACATTCCTTAACACAAGACCTTTCCATTATCTCTCTATGAGTTTTCAGAACACATGAAGTCACTTTTGTGTACGAGGAGATTTAGAAGGACAGTGCTTGTCAAATAACAAAATTCATTGTTGACCATTTAAGAGAATTGCAATATTATACTGAAAAAA

Function

symbol description
rabif Predicted to enable guanyl-nucleotide exchange factor activity and zinc ion binding activity. Predicted to be involved in post-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport and small GTPase mediated signal transduction. Predicted to be active in cytosol and membrane. Orthologous to human RABIF (RAB interacting factor).

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process

KEGG:

id description
K19952 RABIF, MSS4, DSS4; guanine nucleotide exchange factor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_02678050_02678704.mRNA True 772 mRNA 0.40 2 2678050 2679064

Neighbor

gene id symbol gene type direction distance location
CI01000306_02672497_02676431 ADR1, ADIPOR1A, ADIPOR1B, ADIPOR1 coding upstream 1143 2672497 ~ 2676907 (+)
CI01000306_02664578_02669105 NA coding upstream 8813 2664578 ~ 2669237 (+)
CI01000306_02654091_02663519 RNPEP coding upstream 14356 2654091 ~ 2663694 (+)
CI01000306_02643806_02653170 NA coding upstream 24628 2643806 ~ 2653422 (+)
CI01000306_02626856_02627986 NA coding upstream 49866 2626593 ~ 2628184 (+)
CI01000306_02681470_02697984 KDM5B, KDM5BA coding downstream 2406 2681470 ~ 2697984 (+)
CI01000306_02699041_02741501 IPO9 coding downstream 19660 2698724 ~ 2742267 (+)
CI01000306_02752480_02764107 NA coding downstream 73264 2752328 ~ 2764581 (+)
CI01000306_02777496_02790606 SULF2A coding downstream 98338 2777402 ~ 2791125 (+)
CI01000306_02807061_02829421 NA coding downstream 127997 2807061 ~ 2829421 (+)
G430834 NA non-coding upstream 195009 2482106 ~ 2483041 (+)
G430811 NA non-coding upstream 291492 2386284 ~ 2386558 (+)
G430805 NA non-coding upstream 325111 2352711 ~ 2352939 (+)
G430745 NA non-coding upstream 392764 2270777 ~ 2285286 (+)
G430739 NA non-coding upstream 485669 2159462 ~ 2192381 (+)
G430931 NA non-coding downstream 204827 2883891 ~ 3238771 (+)
G430690 NA non-coding downstream 357004 3036068 ~ 3054700 (+)
G430951 NA non-coding downstream 370833 3049897 ~ 3050294 (+)
CI01000306_03048314_03055936 NA non-coding downstream 373948 3048314 ~ 3056098 (+)
G430716 NA non-coding downstream 419580 3098644 ~ 3099359 (+)
G430719 NA other upstream 527096 2148382 ~ 2150954 (+)
CI01000306_01209847_01210850 ACYP2 other upstream 1459493 1209395 ~ 1211232 (+)
G430452 NA other upstream 1527112 1150597 ~ 1150938 (+)
G430409 NA other upstream 1678148 925544 ~ 999902 (+)
CI01000306_00235686_00242814 NA other upstream 2440681 235447 ~ 242861 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 294092 2973156 ~ 2979157 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 1095080 3772689 ~ 3777550 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other downstream 1098988 3778052 ~ 3783019 (+)
CI01000306_03807268_03810946 NA other downstream 1129169 3807268 ~ 3811243 (+)
G432583 NA other downstream 1647338 4326402 ~ 4327822 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003454 rabif coding NC_007122.7 CM002895.2 24815667 ~ 24817637 (+)