CI01000306_03086600_03106758 (HCFC1B, HCFC1A, HCFC1)


Basic Information

Item Value
gene id CI01000306_03086600_03106758
gene name HCFC1B, HCFC1A, HCFC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3086510 ~ 3108215 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_03086600_03106758.mRNA
AATAGTGTTAACGCATTTTAGATACACACATATATGGTATAACAATTATTAAGCTATCGCTAAAGAAATGCAGAATTGCATTTCTCAACTGTAAGTGAGTGTTTCATAAAGAGCTCTAGATCAGGACGTGGTAATTCCGCCATATTTGTTACGGGTGGCTGCAGGAGCGGCTGTACATTGTCAAGAACATGGCGGCTTCCAGGCAGGCATGAGAGTGGATACTTCTTAACAAATTTGGATGAAACTGGACTATCATTTCAAAAACAGACCATCAGAAGATCTCCCTGGATACTGCAACACGAATCTCGTACGTATGATCTATGGCGAAGAGACTACATTAAGCCATAATGTGTATTTTTGGATAGCGAACATAAACTTAGCCGCCATTTTTCTTGTGGGAGCTGCTAGTGGGCTGATTTGACGACAAGATGGCTGCTTACACCGGGGCGGCATGAATTAAATAAAAATTAATCCATCGATAGTTTTCACTTGGAGGAGACCTACGCAAACGTATTTTCTCACAGTATGTATCGGGATGTATTTGCGCTTGCTTATTTATCTGTGGATTCTTTGGTAAAAGATGATTTGATGTCTTGTTTTAGTTGCGCTGCTGGTAACCGCATTCCGCTGCATGATTTTATGCACGCGCGAAAATCTCGTTTCATTATCCAGACCGCTTGGAAATTGCAGCACTCGGTTGATGGTCTGAATCTGCATTGCACTGTAATAAAATCGCACGGTTAAAATGTATTATTGTTGCTGTTTTGAGTGGCTGACAAGATGGCGACTCCCAGAGAGGCATGAAAATAGCCTTCTGCAGCAAATGGGGACTGGGTTTCGAGTGTTAGTCTCTGGATTTGTATCTTTGGCTAGTTTTGCAGCGTTTCACGGAATTGTATTTTGGAAAATGATCACTTTCACAGTTAGTATAGAGTTGTATTTGCATTTGCTACTTGGCTAACTGAAATTTATTGTTTTTATTTGCCGCTCCGCCATTTTTCAGACTGGCGGAGGCTTGTTTCAAGATGGCGACTTCCATGGGTTGATACTCTTTCTGCACCAGGGACATTTAACTGGATAATGTAATTTTGTGATGTGACTTTTAAGCTAGAACTTAGTGCAATGTGGTTTTTTTTATATAACTTAATCGATGCTCAAGCTGCTGCTCGCGGTATTTTAGACTAGTTGACCGGCTTTTAGTCCGTCTGCAAGCGCCAAAATGGCGGCATTCCTGAATTAATCAAACTTCTGAATAACCCACACTGTTTAAAATTGTAATTGTACCACTGTAATGATAAAACAATGTATATATTTATACAGAAGGATATTAATATTAATATATACCGGGGTCTTGTGTGTAATATTTGCCTAGATATCGTTAACTTAAGCTTACGGAACGGGTATATTTGTGACTAAAAGTCGTTGAAGTGCATTCCGTTTTTTCTCAGTAAAAGGACATGACGTCCCCCGGTTCCGTTGTGCCTGGGACCACCGGAGCTCCACTGCAGCCGCGATGGAAGCGGGTTCTGGGGTGGTCCGGGCCGGTACCCCGACCGAGACACGGACACAGGGCCGTAGCCATCAAGGAGCTGATGGTCGTTTTCGGTGGAGGAAACGAAGGAATCGTTGACGAGTTGCACGTTTATAATACTGCAACAAACCAGTGGTTTATACCAGCTGTTCGTGGAGACATTCCTCCAGGCTGTGCAGCTTATGGTTTCGTATGTGATGGTACACGTCTGTTAGTGTTTGGTGGAATGGTAGAATATGGAAAGTACAGCAATGACCTTTATGAGTTGCAGGCAAGCAGGTGGGAGTGGAAAAAATTGAAACCAAAAGCCCCTAAAAATGGAGCTCCACCATGTCCTCGTCTGGGCCACAGTTTTTCTCTTGTGGGCAACAAGTGCTATCTTTTTGGGGGGCTTGCCAATGACAGCGAAGACCCCAAGAACAACATTCCCAGATATTTGAATGACCTTTATACCCTCGAACTGCGTCCGGGCTCCAACGTTGTGGGCTGGGATATACCAGTCACATATGGAGTACTGCCTCCTCCGAGAGAGAGCCACACTGCTGTAATTTATACTGAAAAAACTACTAAGAAGTCCCGCCTTGTTATATACGGAGGAATGAGTGGTTGTCGTTTGGGAGATCTTTGGACATTAGATATTGATACGCTGACCTGGAACAAGCCTGCAATAAGCGGCACTGCTCCCCTCCCCCGTAGCCTCCACTCAGCCACCACTATTACAAACAAAATGTATGTTTTTGGTGGCTGGGTTCCCTTGGTGATGGATGATGTGAAGGTGGCCACACATGAGAAGGAATGGAAGTGTACAAACACACTTGCCTGCCTGAACTTGGACACCTTGTCATGGGAGACTGTTTTGATGGACACTTTGGAGGACAACATACCACGTGCACGAGCAGGACATTGCACTGTTGCTATTAACAACAGACTTTATGTCTGGAGTGGACGTGATGGGTATCGCAAAGCTTGGAACAATCAGGTGTGCTGCAAAGACCTGTGGTACTTGGAGACAGAGCGACCTAATCCTCCCTCACGGGTACAGCTCGTCCGGGCCAACACAAATTCTTTAGAGGTTAGCTGGGGAGCGGTGTCTACAGCAGACATGTACCTGCTTCAGCTTCAGAAATATGATATCCCAACAGCCACTGCTGCCACATCACCAGCCCTCAATGCAGCTCCCTCCCTCCCTGGAAACTCGCCTAGGAGTCCAGCGCCCGCTGCAGCTGCTCCATCTGCTCAGAGTCTGCCGCATAGTGGTATCACCCTTGTGCCCCAGGCTGCTTCCCCCACAGCCTCAGTCTTACCCACCACACCCGCAAATCCTCTGGCAGCCTCAATGGCGCGTGGCCCAGCTATTCTGAAAGTTGCAGCCCCTCAGTCAGGCACCGGGGCATCGATTGTCACTGTTCGCCAAGCCAGCCAAGCTGGAAAATCCCCAGTCACTGTGACATCACTGCCTGCAGGTGTTCGCATGGTGGTGCCACCACAGACCACTCAAGGAACGGCCATTGGCAGCAGCCCTCAGATGAGTGGAATGGCAGCTTTGGCTGCAGCTGCTGCAGCCACACAGAAAATCCCTCCTTCCCCCGGAGCCACTGTTCTCAATGTGCCGGCTGGGGCCACAATTGTAAAAACGGTGGCTATGACACCTGGGTCCACCACTCTCCCCACCACAGTTAAAGTGGCATCACCTGTCATGGTAAGCAACCCTGCCACTCGCATGCTGAAGACCGCCGCTGCACAGGTGGGCACTCCGACAGTGTCCAGTCCCACTACGGGTGCTCGGCCCATCATCACAGTACACAAGTCCGGCACAGTTACCGTAGCCCAGCAAGCTCAGGTTGTGACCACTATGGTGGGCGGAGTCACCAAGACCATCACTCTTGTCAAGAGCCCACTTTCCATGGGAGGAAACCTGATCTCCAACTTGGGCAAGATGGTGTCAATGGTACAGACCAAACCAGTCCAATCGGCTGCTGTGACTGGACAGGCCACCTCCAACCCACTGACTCAGATTATACAGACAAAGGGTCCCCTTCCACCCGGCACCATTCTGAAGCTGGTTACATCTGCGGATGGAAAACCAACCACCATAATTACCACCAGTCAAGCAGGTGGCACAGGAAACAAGCCCACTATCTTGGGCATCAGTGGCATGTCCCCCACTACCACCAAACCGGGCACCACCACTATAATTAAAACAATCCCCATGTCTGCTCTACAGCAGGGAGCTGCAGGTGTGACTAGTAGTACAGGGATGAAGAGCCCTATAACCATCTTCACCACGAAGGTGATGACATCTGGAACAGGAACTCCTGGCAAAATCATTACAGCAGTGCCTAAGATTGGGACAGCAGCAGGACAGCAAGGCCTAACACAGGTTGTTCTGAAGGGAGCCCCTGGTCAGCCTGGAACCATTCTTCGCACTGTGCCGATGGGAGGAGTGCGTCTCGTGTCTCCAGTATCTGGAGTCAAGCCAACTGTAACCACGCTGGTTGTCAAAGGAACAACTGGTGTAACAACTCTTGGCACAGTCACAGGAACCGTTTCTACCAGCTTAGCCGGAGGAAGCCTAGCCAGTGCCAATGCCACCCTGGCAACCCCCATCACCACTCTGGGCACGATTGCCACCCTCTCCAACCAGGTCATTAATGCTACCGCTGTGTCAGCTGCACAGACCAACCTGACCACTGTCACATCCAACATGCAGCCCACCCAGGTGACTCTCATAACTACACCCAGTGGTGTGGAGGCTCAGCCTGGCCAAGATCTGCCTGTTTCCATTCTGGCCTCTCCCACGTCTGAGCAGCCCACCTCTTCTGAGTCTGGTGCAGGCGATACTTCTGGCAGTGTTACTCTAGTGTGCTCCAACCCACCCTGTGAGACTCATGAGACGGGCACCACCAACACGGCCACCATAGCAACGGCGAATATGGGCACTGGACCAGCTGGCACAGTACAGAGAGTGTGTTCCAACCCGCCCTGTGAAACACATGAAACGGGTACAACGAACACTGCCACCACAGCATCTGCCAACATGGGCACTGTTCAGAGGGTCTGCTCAAACCCACCATGTGAGACTCATGAAACGGGTACCACCAACACAGCAACCACAGCATCTTCAAGTATGGGCACTGCTCCTGCTGGCATGGTGCAGAGGGTATGCTCAAACCCACCCTGTGAGACCCATGAGACGGGCACCACCAATACAGCAACCACAGCTTCATCTAACATGGGCGGAAACCAAACCGGAACGGTGCAAAGGGTCTGTTCAAACCCACCTTGTGAGACCCACGAGACGGGCACCACAAACACGGCCACCACGGCTTCATCTAACATGGGCGGAAACCAAACCGGAATGGTGCAAAGGGTCTGTTCAAACCCACCTTGTGAGACCCACGAGACAGGCACCACCAACACGGCCACTACGGCTTCATCTAACATGGGCGGAAACCAAACCGGAGCAGTGCAGAGAGTTTGCTCAAATCCACCTTGTGAGACCCACGAGACAGGAACCACAAACACAGCCACCACGGCTTCATCTAACATGGGTGGAAATCAAACCGGAACAGTGCAAAGGGTCTGTTCAAACCCACCTTGTGAGACCCACGAGACGGGAACCACCAACACAGCAACCACGGCTTCATCTAACATGGGTGGAAACCAAACGGGAGAGGTGCAGAGAGTTTGCTCAAATCCACCTTGTGAGACCCACGAGACGGGCACCACCAACACGGCCACCACTGCCACCTGCAGTATGGAGACAGATGAGGGAACAGCCCAGCAGAGTGGTGAAGCATCAGAATCTACCACTAGCACGGAGGGCCTGCCATCCACTGCAGCGCCCCAGAGCAGAGCCATTACCACAGTCACACAGGCCACGCCTCTACCAGGACCAGCTGTTCCATCTATCTCTTCCATCACGGAGTCATCCTCAGAGGCAGGAGCTGAGCCGGTCGTTATGGAGACCTCGGAGGCAGAGACCTTGCAGACCGAAGGCCAGGCTGAAGCGGAGGCAGTTGCCATGCAGGCAGAGTTCCAGGCAGAGGCGGGGGCAGTAGCTATGCCCAGTGACTTCCAGGCAGAGGCAGCAGCCTTGCCGAGTGACTTCCCAGGAGAAGCCGTGGCGGTAGCCATGCAGGCAGAGAGCCAGGCAGAGGCAGGGGCAGTGCCCATGGAACATGATGCTTCTGGCATGGCAGAGGGAGAAACTGCTCAGGAGCAGCTACCAACAGCAGTGATGGAAGGTGTAGAGGCGGCATCAGCATCGCAGGCTGAGGCACTGGCCTTGCCACCAGAGCTGATGTCAGACGGACAGCCCACAACGCTGATGGTGACGGGTCTGACCCCAGAGGAGCTGGCCGTTACGGCAGCCGCAGAGGCAGCGGCCCAGGCTGCAGCATCAGAGGAGGCCCAGGCCCTCGCCATCCAGGCTGTACTGCAAGCAGCACAGCAGGCTGTTATGAGCTCAGGTGATGGAGATGCCGGAGGAGAAGACCAGCAGACCCACACCATACCCATCGTTCTGACCCAGCAAGAACTAGCGGCTTTGGTTCATCAGCAACAGCAGCTCCAGGCAGCCCAGCAACAAGCCGCTGCCCAGGCCGCTGCCCAGGCCGCACTACCCACTGAGGGCTTGGCTCCGGCTGACAGCCTAAATGATCCCTCCTCAGAAAGCAATGGACACAACGAGATGGCTGCCGCTGCCACAAGTGCAGTAGCCGGACTGCTGCCTCGCACAACTGCAGAAGCCTTGGCTCCATCCAGCACATTAGCACCTGTAGTAGTTGCCAGTCCAGCTAAGATGCAGGCAGCTGCAACTCTCACTGAAGTAGCCAATGGCATCGAGGCTGGGAAACAAATTCCTCCTACTGTTACAGTCAAACCTCAAGTGAAGAAAGAAAACCAGTGGTTTGATGTTGGCATTGTCAAAGTGACCAATATGGTTGTAACACATTTCTACATGCCTGCAGATGACTCTGCTTATGTTGAGGATGATTCAGGCACAATCCCTGACTACAGCCAAATGAAGAGGGTGGAGCTTCAGCCCGGAACCGCCTACAAGTTCCGTGTGGCGGGTATAAACATTTGTGGCCGTGGAGCCTTTTCTGAAATATCTGCTTTCAAGACCTGTTTACCGGGCTTCCCAGGAGCACCATGTGCCATAAAGATCAGCAAGAGTCCAGACGGTGCCCACCTTACATGGGAGCCTCCATCGATGACATCAGGAAAGATCACAGAGTACTCGGTGTATTTGGCCATACAGAGCAGCCAGACCACCGAGGCGAAACCCTCGGCCCCCGCCCAGCTTGCCTTCATGCGCGTGTACTGTGGGCCAAACCCTTCCTGTCTGGTTCAGTCCTCCAGCCTGTCCAATGCGCACATAGACTATACCACCAAACCCGCCATCATCTTCCGCATCGCCGCTCGTAACGAGAAAGGTTATGGACCGGCTACGCAAGTGCGATGGCTGCAAGAGTCTAACAAAGATGGCCTTTCTGCAAAGCCTGCCCCAAAAAGAGCAGTTTCTTCACCAGATACGAAAGGGATTGGTCAGAAGAAAGCAAGAATGGACCAGTAAGCCACTCTCTTCATTCGTCCTCCAAGACTTCCACTACTCATAGCGCTCCATCTGGATTCAACACATCTTCAACTGTAACCATCCATTAAA

Function

symbol description
hcfc1a Predicted to enable transcription coactivator activity. Predicted to be involved in chromatin remodeling and regulation of transcription, DNA-templated. Predicted to be part of histone methyltransferase complex. Human ortholog(s) of this gene implicated in methylmalonic acidemia and homocysteinemia cblX type. Orthologous to human HCFC1 (host cell factor C1).
hcfc1b Predicted to enable transcription coactivator activity. Acts upstream of or within chondrocyte differentiation and embryonic viscerocranium morphogenesis. Predicted to be part of histone methyltransferase complex. Human ortholog(s) of this gene implicated in methylmalonic acidemia and homocysteinemia cblX type. Orthologous to human HCFC1 (host cell factor C1).
hcfc1 Enables several functions, including chromatin binding activity; identical protein binding activity; and transcription coactivator activity. Involved in several processes, including histone H4 acetylation; positive regulation of macromolecule metabolic process; and protein stabilization. Located in cytoplasm; neuronal cell body; and nucleus. Part of MLL1 complex; Set1C/COMPASS complex; and histone acetyltransferase complex. Implicated in methylmalonic acidemia and homocysteinemia cblX type.

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K14966 HCFC; host cell factor

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_03086600_03106758.mRNA True 7202 mRNA 0.52 27 3086510 3108215

Neighbor

gene id symbol gene type direction distance location
CI01000306_03070842_03073585 GATA1A coding downstream 12876 3070578 ~ 3073634 (-)
CI01000306_03044394_03045362 NA coding downstream 40305 3043376 ~ 3046205 (-)
CI01000306_03006241_03009198 NA coding downstream 77154 3006190 ~ 3009356 (-)
CI01000306_02966994_02968675 SNAI1A coding downstream 117324 2965937 ~ 2969186 (-)
CI01000306_02919027_02938762 MYH7B, MYH7BA, MYH7BB coding downstream 147748 2918888 ~ 2938762 (-)
CI01000306_03258305_03268722 BRPF3A coding upstream 149008 3257223 ~ 3268722 (-)
CI01000306_03278833_03292888 PLCH2B coding upstream 170618 3278833 ~ 3292888 (-)
CI01000306_03296768_03330783 SKIA, SKIB, SKI coding upstream 187508 3295723 ~ 3330783 (-)
CI01000306_03334185_03336292 NA coding upstream 225617 3333832 ~ 3336292 (-)
CI01000306_03357647_03435533 KAZN, KAZNB coding upstream 249432 3357647 ~ 3435533 (-)
G432051 NA non-coding downstream 130166 2952249 ~ 2956344 (-)
G432032 NA non-coding downstream 204777 2876373 ~ 2881733 (-)
G432196 NA non-coding downstream 327751 2758459 ~ 2758759 (-)
G432173 NA non-coding downstream 342659 2743133 ~ 2743851 (-)
G432153 NA non-coding downstream 344237 2740941 ~ 2742273 (-)
G432280 NA non-coding upstream 15262 3123477 ~ 3125954 (-)
G432285 NA non-coding upstream 29070 3137285 ~ 3137732 (-)
G432282 NA non-coding upstream 30576 3138791 ~ 3139881 (-)
G432281 NA non-coding upstream 40725 3148940 ~ 3152959 (-)
G432308 NA non-coding upstream 123296 3231511 ~ 3277198 (-)
G432022 NA other downstream 82619 3000236 ~ 3003891 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 1337560 1717933 ~ 1726043 (-)
G431814 NA other downstream 1774076 1311702 ~ 1312434 (-)
G431706 NA other downstream 1923172 1163027 ~ 1163338 (-)
CI01000306_00482506_00494090 PFKLB, PFKL other downstream 2602861 482482 ~ 494090 (-)
CI01000306_04544349_04545034 NA other upstream 1434508 4542723 ~ 4545244 (-)
G433450 NA other upstream 2253428 5361643 ~ 5383763 (-)
G433670 NA other upstream 2932799 6041014 ~ 6041283 (-)
G433985 NA other upstream 3087892 6196107 ~ 6197210 (-)
G434016 NA other upstream 3246965 6355180 ~ 6361643 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004149 hcfc1a coding NC_007122.7 CM002895.2 25436440 ~ 25461336 (-)