CI01000306_03123572_03128332 (KFH-R, OPN1LW1, OPN1LW2)


Basic Information

Item Value
gene id CI01000306_03123572_03128332
gene name KFH-R, OPN1LW1, OPN1LW2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3123434 ~ 3129725 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_03123572_03128332.mRNA
GTATAAAAGCACTTTGACAAGTGCCCAAAGTCTGTCGGTGTGAGTCGGCCAGAGACAGAAGTTAGTAGAAGCACAGAGGCCCAGACCTTTACAACAGCTAAGTAACTACAGGTTTGGGCTATACAACAACCCCCAAAAATGGCAGAGCAATGGGGAGAAGCGATATTCGCAGCCAGGCGAAAAGGAGATGAAACAACGAGAGAAACAATGTTCGTATATACTAACAGCAATAACACCAGGGATCCCTTTGAGGGACCCAACTACCACATTGCCCCTCGATGGGTTTACAACCTAGCAACAGTCTGGATGTTCTTCGTGGTCGTCGCCTCGACCTTCACCAATGGCTTGGTGCTGGTGGCCACGGCCAAATTTAAGAAGCTCCGTCACCCTCTCAACTGGATCTTGGTCAACCTTGCTATAGCTGATCTAGCAGAGACTCTGTTGGCCAGCACCATTAGTGTGATCAACCAAGTTTTCGGCTACTTTATCCTCGGACATCCCATGTGTATTTTTGAAGGCTACACTGTATCTGTATGTGGTATCGCTGGTCTGTGGTCTTTGACTATCATCTCTTGGGAAAGATGGGTGGTTGTCTGCAAACCATTTGGAAATGTCAAGTTTGATGGTAAATGGGCGGCTAGTGGCATCATCTTCACCTGGGTTTGGTCTGCTGTCTGGTGTGCACCTCCCATCTTTGGCTGGAGCAGATATTGGCCTCACGGTCTGAAGACCTCCTGCGGCCCTGATGTCTTCAGTGGAAGCGAGGACCCTGGTGTCCAGTCCTTCATGATTGTCCTAATGATCACTTGTTGTATCATCCCTCTGGCCATCATCATTCTCTGCTACTTGGCAGTGTACTTGGCCATTCATGCTGTCGCCCAGCAGCAGAAGGATTCTGAGTCCACACAGAAGGCAGAGAAGGAAGTGTCCAGAATGGTGGTTGTCATGATCCTGGCCTACTGTGTTTGCTGGGGTCCTTATACGTTCTTCGCCTGCTTTGCAGCTGCAAACCCAGGCTATGCCTTCCACCCCCTGGCAGCAGCCATGCCTGCCTACTTTGCCAAGAGCGCCACCATCTACAACCCCATCATTTATGTCTTCATGAACCGACAATTCCGCGTATGCATCATGCAGCTCTTTGGAAAGAAGGTGGATGATGGGTCTGAGTTTGTTGGTTGCGATTTCAACCACAAACGGAGAAATAAGTGGCAACCACCAACTCAGGGAGAGAAGAATCCTGTGACAGGGTTTACTAAATGGCAGAGAGAGCCAATGCTGCCAGACAACAAGGGGACGACTCAACAAGAGAGTCTGTTTTCGTCTATACCAGCAGCAATAACACAAGATCCCTTTGAGGGACCCAACTACCACATTGCCTCTCGATGGGTGTACAACATCGCAACAGTCTGGATGTTCTTCGTGGTCGTCGCCTCGATCTTCATCAATGGCCTGGTGCTGGTGGCCATGCTGCAAACCCAGGCTATGCCTGCCTACTTTGCCAAGAGCGCCACCATTTACAACCCCATCATTTATGTCTTCATGTTCGACAGCTCTTTGGAAAGAAAGTTGATGAGGGATCTGAGGCGTCCACATCCAAAACAGAAGTGTCTTCTGTGGCTCCGGCATAAACCTCATATCATTTATAGCTCCTATCGAACAAGATGAAATGGGTTTCGGAGAACTGGACTTACAGACTTAAAGGGGACATATCATGAAAATCTGACTTTTTCCTAGTTTAAAGGGTTAGTTCACCCAAAAATTATATTATGTAATTTATTACTCACCCTCATGTCGTTCCACACCCATAAGACCTTTGTTCATCTCTGGAACACAATTAAGATATTTTTGATAAAATCTGATGACTCAGTGAGGCCTAGCATCGCCAGCAATAACACTCTCTTTTTCAATGCCCAGAAAGCTACTAAAAACATATTTAAAACAGTTCATGTGACTACAGTGGTTCAACCTTAATATTATAAAGCGACGAGAATATTTTTGTGTGGCAAAAATAACAAAATAACGACTTTATTCCACAATATCTAGTGATGGGCAATTTCAAAACACTGCTTCATGAAGCTTCGAAGCTTATGAATCATTTGTTTCGATTCAGTGGTTCAGAGTGCATATCAAACTGCCAAAGTCACGTGAACTGTTGAAGTTTCAAAACACTTACGACGTAACGAAGCCTCGTTTACTGAAATCATTTGATTTTGGCGCTCTGAACCACTGAACTGAAACAAATGATTCGTAAGATTCGAAGCTTCATGATGCAGTGTTCTGAAATCGCCCGTCACTAGATATTGTGGAATAAAGTCGCTATTTTGTTATTTTTGGCACACAAAAAGTATTCTCGTCGCTGCAGTGTGTAGCTTTATCCATGTTAGCTGTGCAGCACGCTATCAAACTCATTCAGAATCAAATGTTAGCGAACATCCACAAAATACATGCCATACCTACATGATCTGATATGCTGCATCACAAACAGTTTACAATGATCCATTTTGAGAGTTATATTTGCTGTGTGAGCTTCTCCTCTATTGTTTATGCCTCAGTGTATGGGAATCGCGAGCTTGGGGGTGGGGAGCACAAGCTCATTTGCATTTAAAGGTACACACACCAAATCAGCACATTTTTTCTCCCACCCAAAAATAGGCATTTAAAACATGGTATAATAAGAAAAAATCCATGGGGTATTTTGAGCTGAATCTTCACAGACACATTCTGGGGACACCTGAGACTTATATTACATCTTGTAAAATGGGGCATAATAGGTCACCTTTAAAGTTGCAATAATCTTGACTGTACATATGTAGCTAAAAGTCTTCTGAAAGAAACTGTTTACTGTCCTGGGAAATTAATGAACATCATTTAGCAAGATCTAATTAATTTGCAAGGCAAACTTGTTTGAATGTCACTCAAATCTTTTATGAAGTATGCTGAAAAATGTAATTATGAAAAACAATTATTGTTGTTTTTCAAAGAGCTATGTTTTGTAGATGGATTTGCAAATGTAAAAGTACATTTTTATGTTATATTGTTTCGTTGTTTTCTGAAGAAA

Function

symbol description
opn1lw1 Predicted to enable G protein-coupled photoreceptor activity. Acts upstream of or within photoperiodism. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including digestive system; endocrine system; heart; photoreceptor cell; and visual system. Human ortholog(s) of this gene implicated in blue cone monochromacy and red color blindness. Orthologous to several human genes including OPN1LW (opsin 1, long wave sensitive).
opn1lw2 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including endocrine system; heart; liver; red sensitive photoreceptor cell; and visual system. Orthologous to human OPN1MW2 (opsin 1, medium wave sensitive 2).

NR:

description
red visual pigment, partial

GO:

id name namespace
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG:

id description
K04251 OPN1LW, OPN1MW; long/medium wavelength-sensitive opsin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_03123572_03128332.mRNA True 3058 mRNA 0.43 11 3123434 3129725

Neighbor

gene id symbol gene type direction distance location
CI01000306_03118178_03120842 OPN1SW2 coding upstream 2511 3117988 ~ 3120923 (+)
CI01000306_03081487_03082695 NA coding upstream 39125 3080835 ~ 3084309 (+)
CI01000306_03062452_03066451 ADNPA coding upstream 56778 3062452 ~ 3066656 (+)
CI01000306_03048314_03055936 NA coding upstream 67336 3048314 ~ 3056098 (+)
CI01000306_03018466_03023859 FAM83D coding upstream 99343 3018134 ~ 3024091 (+)
CI01000306_03132695_03139713 GNL3L coding downstream 2970 3132695 ~ 3139724 (+)
CI01000306_03141095_03149372 TFE3B coding downstream 11370 3141095 ~ 3149434 (+)
CI01000306_03163659_03168243 CXXC1B coding downstream 33548 3163273 ~ 3168338 (+)
CI01000306_03172031_03180084 NA coding downstream 42035 3171760 ~ 3180888 (+)
CI01000306_03196205_03203310 CCDC120 coding downstream 66480 3196205 ~ 3204162 (+)
G430716 NA non-coding upstream 24075 3098644 ~ 3099359 (+)
G430690 NA non-coding upstream 68734 3036068 ~ 3054700 (+)
G430951 NA non-coding upstream 73140 3049897 ~ 3050294 (+)
G430834 NA non-coding upstream 640393 2482106 ~ 2483041 (+)
G430987 NA non-coding downstream 151006 3280731 ~ 3280990 (+)
G431039 NA non-coding downstream 230052 3359777 ~ 3370252 (+)
G431107 NA non-coding downstream 357798 3487523 ~ 3488001 (+)
G431125 NA non-coding downstream 388329 3518054 ~ 3518312 (+)
G431129 NA non-coding downstream 402169 3531894 ~ 3532107 (+)
CI01000306_02974291_02976718 TP53INP2 other upstream 144277 2973156 ~ 2979157 (+)
G430719 NA other upstream 972480 2148382 ~ 2150954 (+)
CI01000306_01209847_01210850 ACYP2 other upstream 1904877 1209395 ~ 1211232 (+)
G430452 NA other upstream 1972496 1150597 ~ 1150938 (+)
G430409 NA other upstream 2123532 925544 ~ 999902 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 644419 3772689 ~ 3777550 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other downstream 648327 3778052 ~ 3783019 (+)
CI01000306_03807268_03810946 NA other downstream 678508 3807268 ~ 3811243 (+)
G432583 NA other downstream 1196677 4326402 ~ 4327822 (+)
G432678 NA other downstream 1392457 4522182 ~ 4522536 (+)

Expression


Co-expression Network