CI01000306_03196205_03203310 (CCDC120)


Basic Information

Item Value
gene id CI01000306_03196205_03203310
gene name CCDC120
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3196205 ~ 3204162 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_03196205_03203310.mRNA
ATGGAGGTCAAAGGTCACCTGATCACTACCATGGGCTTAGGGGCTCCAGATGTCCAGGGCTGTCAGGACAGCAAGCTGCAAGCAGAGCGAATCTCAGAGCTGCAGGAGCGAAAACAGAGTCTGCAGAGCCTTTTGATCAGTCGTCTCGGAGAGCTGCGGCAAGTGTGTCTTCTGGAGGCGGAGCTCACAGGGAAGCTTCCACGGGATTTTCCTTTAGAAGAAGGGGAAAGACCTCCCTTTGTTCAGCGCCGAGCTGGCCTGGCCCCTCATGTTACCTCAAAAGGAGAGGATGACCCAGGTCAGCGAAGGCAGATGAAGGCTCTCTTCAGTGGTGCCCTGCGCCGGAGCATCGATTATGATAAAAATGCATTGCACAAGGATTCGTCTCCCAGTGTGGCACCTGAGCATCGCTCCTTGTCTCACCCCCGGCTGGCCCCAGGCAGTCCCGACAGTAGGCTCTGTAGGAAGCTGTCACCTGTGGAGATTTACTACGAGATGAGGACTCGCCGCAACTCAGCCTCAAGCTCTGTGAGGCCAGAGATGCCTGGTGGTATTGCACTAAAGCAGTGGTGTGGAAGTCCAGATCTTCCTCAGTTTGTCCCACTGGCATCTTTGGAGGGCTCCTCATCTGAGCGCCGCAGCTGCCCCTACAGCTCCCGCGCTCGCCGTAGCAACAGCTCTGAGGCGCTACTTGACCGCTCGAGTCTCCCTGAGCCCGGTCCTCCCCGCAATGGTATGCCACCCCGAGCTGGACCATACAAGAGCTCTGAGTCCCTCACGGATGGGAAGCTCCGTCAGATATATCAAGGCAGCCCAGAGAGACAGATGATGGGGTTTAAAGACCAGGGTCGAATGCGCTCCTCTCTTGGTGGCCAAAGCAGTGGCACTGGTTACAATGAGATTTTGATAGACTACATTTGGGGCAAACAGCAAAAGAAGCCGCTCCAGGCTCCGCAGAATCAGTCAACAGGACGAATCTGGCCAGACTTCTCCACTCCTCCATCAGGCACCCCTCCACACTATAACGGTTTCTCACATTCGCAGTTACATCTGGCTGCCGCCCCACCTTCCTATAGCCCCATGCTGCTGCGGGGTCAAGAGGCCGAACCCCGTCGGGTCAAAGTGACACGAACAAAATCCTGCGGACCCTTCATCCCACAGGATGCTGTGTTGTTCTCGGCGTATGATCTGTCACATCCCTCCTCTGGATCCACAACCTCTTCTATTCCCAACCTGCTCCCTCACCATGCAGAGCTGTCCACTGCTGCAGCGTTCGGCCGCAGGCCACCTCAGTTCTCTCTGCCCACTCCTGAGGACTCCACCCGCAGTCTGCACAAGGCACTGGCACTGGAAGGACTCCGGGACTGGTATCTGAGGAATGCCTTAGGCTATTCCACTATGGCCAAAGGTCACGATGGACTTTCCATGCGCCACTCACACACTCATCACCACCTAGTGCACCAGCCTCAGTCCGTTCCAGCCGACCCACTGTACTCAGTGCACCGTCAGATACCTCAGTCAGCTTCATTTCATGGGCATCCCTTGCATGCCAGGTCCGTAGAGCTCTCTCTCTACCCAGAGCCTTTCCCCTCAGAGGGGAACACTCAGAAAGAATCTGGCTCTGAGCCCCCTTCACCTGGAACACTGGTCTGACTGGCAGCCGACACACCCTAGGGCCTCCAATGCAACTTGTTGCAATATCCAATGCAAAATGTCACCTTGTTATAGGCATGCACCGGTTTGATACTGTGCGCAAATACTAGTACTCCTCTAGTACTAGTTTGTAGCATAAATGCTGCAACACAAAGAAAAAATGACAGCAGAACAAAATAGCATTTGGTTGGAGATATTGAACATTAAAAATATATAATTATATATAATATAATTTTAACAAAGTACAGGGAAGAAGGAGGCGGGAACCGGCAAACATTCAATGTAAAGTTTTAATCATAAAATAAACAAATAATAAAACAAAAGTAAAGCATTAATAAAACACCAACATAAAGTCCAGGCCTGGTCCTCTCTCTTCTAGAACTGTCGTCACTCCTCCTTCATCCTTCCGGAGCTCCTCCGTGGGACTGGAGACTTGTGTGGCGCACAGGTGATGCTCATTGGCACTCGTGCCACTGGCCTCGCTCCATTCCCACGGCTCTCGGCCCTGCCCTGCTTGCCACAATATTATATAAATTACGACATTATTTAAAAGTACAAGTATTGTACTGCATCTAACAGAGATATTGGTTCATCCCTACATTGTTCAGCAAATAAGGAGGCATCTTTAAACAACAGAGAACTGAAATAGTAGATCAGTGTGTTGGCTGTCATAGATCTAGCGCTGCGCTTGATTGTAAACTGGTGTTTACAAGGTACATTTTGTTTTGTTTTTCTCCATACTCTGTGTGTGTATTAATGGGATGTTATTGTAATGTATCTACATTTTGAAAACAAATTATAAAGTTAATCATCTCCACTTCATCCTGAGATATATTTATATATTTTCAGAGA

Function

symbol description
ccdc120 Involved in microtubule anchoring at centrosome and protein localization. Located in centriole. Part of centriolar subdistal appendage.

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_03196205_03203310.mRNA True 2505 mRNA 0.50 7 3196205 3204162

Neighbor

gene id symbol gene type direction distance location
CI01000306_03172031_03180084 NA coding upstream 15317 3171760 ~ 3180888 (+)
CI01000306_03163659_03168243 CXXC1B coding upstream 27867 3163273 ~ 3168338 (+)
CI01000306_03141095_03149372 TFE3B coding upstream 46771 3141095 ~ 3149434 (+)
CI01000306_03132695_03139713 GNL3L coding upstream 56481 3132695 ~ 3139724 (+)
CI01000306_03123572_03128332 KFH-R, OPN1LW1, OPN1LW2 coding upstream 66480 3123434 ~ 3129725 (+)
CI01000306_03214469_03216852 COMTB coding downstream 10307 3214469 ~ 3216880 (+)
CI01000306_03219408_03238461 GRM7, GRM6B coding downstream 15246 3219408 ~ 3238474 (+)
CI01000306_03244498_03247567 OTUD5B, OTUD5, OTUD5A coding downstream 38734 3242896 ~ 3247828 (+)
CI01000306_03248839_03256675 MON1BB, MON1B coding downstream 44677 3248839 ~ 3257063 (+)
CI01000306_03270390_03277409 NA coding downstream 66228 3270390 ~ 3277556 (+)
G430716 NA non-coding upstream 96846 3098644 ~ 3099359 (+)
CI01000306_03048314_03055936 NA non-coding upstream 140135 3048314 ~ 3056098 (+)
G430690 NA non-coding upstream 141505 3036068 ~ 3054700 (+)
G430951 NA non-coding upstream 145911 3049897 ~ 3050294 (+)
G430834 NA non-coding upstream 713164 2482106 ~ 2483041 (+)
G430987 NA non-coding downstream 76569 3280731 ~ 3280990 (+)
G431039 NA non-coding downstream 155615 3359777 ~ 3370252 (+)
G431107 NA non-coding downstream 283361 3487523 ~ 3488001 (+)
G431125 NA non-coding downstream 313892 3518054 ~ 3518312 (+)
G431129 NA non-coding downstream 327732 3531894 ~ 3532107 (+)
CI01000306_02974291_02976718 TP53INP2 other upstream 217048 2973156 ~ 2979157 (+)
G430719 NA other upstream 1045251 2148382 ~ 2150954 (+)
CI01000306_01209847_01210850 ACYP2 other upstream 1977648 1209395 ~ 1211232 (+)
G430452 NA other upstream 2045267 1150597 ~ 1150938 (+)
G430409 NA other upstream 2196303 925544 ~ 999902 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 569982 3772689 ~ 3777550 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other downstream 573890 3778052 ~ 3783019 (+)
CI01000306_03807268_03810946 NA other downstream 604071 3807268 ~ 3811243 (+)
G432583 NA other downstream 1122240 4326402 ~ 4327822 (+)
G432678 NA other downstream 1318020 4522182 ~ 4522536 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003481 ccdc120 coding NC_007122.7 CM002895.2 25583950 ~ 25618583 (+)