CI01000306_03244498_03247567 (OTUD5B, OTUD5, OTUD5A)


Basic Information

Item Value
gene id CI01000306_03244498_03247567
gene name OTUD5B, OTUD5, OTUD5A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3242896 ~ 3247828 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_03244498_03247567.mRNA
GTTTAAAAGTGGCAAAGTGATAATGTGGACAAAAAACCTGGAACTAGTTCATAGTTGTGCAGTTATAGAACGTCTGTCAACCAATCAGAATCAAGCATTCAGCAGCATTGGTGAATGACAAACATAAGACACACTACTGGCACTTTAAAGATGGGTCAAATTTAACCTATACACTACCGGTCAAAAGTTTGGAAACATTACTATTTTTAATGTTTTTGAATGAAGTCTCTTATGCTCATTAATGCTGCATTTATTTCATAATAAATACAGAAAAAACAATAATATTGTGAAATATTATTACAATTTAAAATTATGGTTTTCTATTTTAATATACTTTAAAATATAATTTATTTCTGTGATGCAAAGCTGAATTGTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTGTAATATGCTGATTTATTATCAATGTTGGAAACAGTTGTGCTGCTTAATATTATTTTATAACCTGTGATTCTTTTTCAGGATTCTTTGCTGAATAAAAAGTTAAAAAATATCAGCATTTATTTAAAATAGAAATCTTTTGTAACAATATACACTACCGTTCAAAAGTTTGGGGTCAGTAATTTTTTTTCTTTCTTTTTTTTGAAAGAAATTAATACTTTTATTCAGCACGGATGTGTTAAATTGATAAAAAGTGATAGTAAAGATTTATATTGTTAGAAAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTTGCATCACAGAAATAAATTATATTTTAAAGTATATTAAAATAGAAAACCATAATTTTAAATTGTAATAATATTTCACAATATTATTTTTTTTTCTGTATTTATTATGAAATTAATGCAGCCTTAATGAGCATAAGAGACTTTGTTCAAAAACATTAAAAATAGTAATGTTTCCAAACTTTTGACTGGTAGTGTGTGTTCACCGATAAAAGATTTTTAAATAGTTAAATATGTAAATTAGTTACTTTTTTGAATATGTTGACTACACTGTCACAAAAACTGGTTCTAATGTGTGGTTTTCAATAACACTTTCTTCACTGGAAATGGATCAAAAATCACCGTAAGTCAATAGAAGGGCTGATGCGGTAGGGGGCAGTGCAAAGCACCATAAGCCCATTTGTCAACAAGAAGCAGAGCAGGCGTCGGAAGTGACGTGAAATCGCGTTGTGGTTTGTTGATGTTTGTGTCAAACTCTCGCTCGGTCGTTGTTACGAAAGAAAAAACCTCGAAACTGAAAGATCTGTGACGACCGTATTATTTCACCGACACCTCATATTATGCCAGGACGGGTGTAACTATACATGCAGCGAACAAACTGCTCATATACAAGTGTGAAAGGCCGTTTATTCTCTGTGTTGTAACACATAACAACACAAATCACCGCAAGCTGGCCAGCGATGACAATCCTCCCAAAGAAGAAACCGGCCTCTACAGCCGGTGGCGGTGATCATACGGACGAACCGGACAGACGAGGCGGCTCTGAGTCGCACCCTCATCCCCTCGCAGGACGATCGGGGTCCCGACCCAGGGCCTCTCCGCCGCCGTGGACATACCAGGCCACACCGCACACGTCCAGAGAGGAGCGGCGGATCGAGGCGAGCACTCGCCCGCAGCCGGCCTCCCCTCAGCCCGGTACCGCTGGAGCTCCGGTCGTGCAGTGCGAAGGGAGCGCGAACTCAGTTGTGGTCGCAGGTCGTGTCGAGTTACCCTGCGGCGCAGGTGGTGTTGGAAGCTGCTGCTCGGGACCCGGACTCAGCAAGCGGCGACGGCAGGCGACGAAAAATGCAGATTACTTTTCCAGTTATGTCACAGAAGATTTCACCACATACATTAACAGAAAGAGGAAGAACAACTGCCATGGGAACCACATAGAGATGCAGGCCATGGCAGAAATGTACAACCGGCCGGTGGAGGTTTACCAGAATGGCGTTGAGCCAATTAATACGTTCCACGGCATCCAAGAGAACAACGATGAGCCGATACGTGTCAGTTACCACAAGAACATCCATTATAACTCTGTGGTGAATCCCTACAAGGCCAGTGTTGGGGTCGGGCTGGGCCTCCCCTCCTTTAAACCAGGGTACGCTGACCAGTGTCTCATGAAAAACGCTATTAAGACATCTGAGGAGTCTTGGATTGAGCAGCAGATGCTGGAGGATAAGAAGAGAGCAACAGATTGGGAGGCCACCAATGAGGCCATTGAGGAGCAGGTGGCCCGTGAGTCCTACTTGCAGTGGCTTCAGGACCAAGAGAAGCAAGCGAGACAGCCTCGTAAAGCTAGTGCCACCTGCAGCTCTGCCACAGCCGCCACATCCAGTGGCTTTGAGGACTGGGGATGCAGGTCTCCTCGCCAACGAAGCTCCGCCCCATCTCCAGAGCATCCAGGCCCGGCTCACCCTGAACCCTCCGTCAAACCCCCCTCCCCAGCAGGAGCCTCACTGGTTCTTCCCAAACCCCCATCACCATGTGCCCCAGGTCCAAGTCATCAGTCTTCAGCCAACTCTTCCCTGGTGTCTCTCTACCCAACCCTGGGCTACAGGACTCTAATGCAGGATATGTCACCTACTGCCTTTGGTTTAACAGATTGGGAAGATGATGACGTTCTGGCTTCAGTTCTGGCTGCTTCACAACAAGAATACCTCGATAGCTTGAAGAAAAATGCAATGCACAGAGAATCTTCTCCAGACTGTAGTTGATATATTGGACATCATAACTTGCAGCACAAACCATGGAACAGCTGCATTTCTTTATTTCAACACCATACAATGTTTCTTCCTCTCCCCTCCAATTTATAAAAAACACTGTATTCTGATCTTTTTTTCTAACCCATTTTCCTTAATTTCATTAAACTCCATGGACCTAGTTAGGTGCATGTTTAAATAAGCATTGTAAAATTAATATTAAAAATATCATCTCAACTGTTTATTATTATCAGGTGTTTTCATTATTTGAGCACA

Function

symbol description
otud5a Predicted to enable Lys63-specific deubiquitinase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein K48-linked deubiquitination; protein K63-linked deubiquitination; and response to lipopolysaccharide. Predicted to act upstream of or within proteolysis. Orthologous to human OTUD5 (OTU deubiquitinase 5).
otud5b Predicted to enable Lys63-specific deubiquitinase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within proteolysis. Orthologous to human OTUD5 (OTU deubiquitinase 5).
otud5 Enables Lys48-specific deubiquitinase activity; Lys63-specific deubiquitinase activity; and thiol-dependent deubiquitinase. Involved in several processes, including positive regulation of TOR signaling; protein deubiquitination; and response to lipopolysaccharide. Acts upstream of or within protein deubiquitination. Predicted to be located in cytosol.

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K12655 OTUD5, DUBA; OTU domain-containing protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_03244498_03247567.mRNA True 3162 mRNA 0.39 7 3242896 3247828

Neighbor

gene id symbol gene type direction distance location
CI01000306_03219408_03238461 GRM7, GRM6B coding upstream 4422 3219408 ~ 3238474 (+)
CI01000306_03214469_03216852 COMTB coding upstream 26016 3214469 ~ 3216880 (+)
CI01000306_03196205_03203310 CCDC120 coding upstream 38734 3196205 ~ 3204162 (+)
CI01000306_03172031_03180084 NA coding upstream 62008 3171760 ~ 3180888 (+)
CI01000306_03163659_03168243 CXXC1B coding upstream 74558 3163273 ~ 3168338 (+)
CI01000306_03248839_03256675 MON1BB, MON1B coding downstream 1011 3248839 ~ 3257063 (+)
CI01000306_03270390_03277409 NA coding downstream 22562 3270390 ~ 3277556 (+)
CI01000306_03612105_03612431 NA coding downstream 363977 3611805 ~ 3612761 (+)
CI01000306_03642939_03646831 PPCS coding downstream 395111 3642939 ~ 3647153 (+)
CI01000306_03658929_03661523 RBM12 coding downstream 410812 3658640 ~ 3662015 (+)
G430931 NA non-coding upstream 4125 2883891 ~ 3238771 (+)
G430716 NA non-coding upstream 143537 3098644 ~ 3099359 (+)
CI01000306_03048314_03055936 NA non-coding upstream 186826 3048314 ~ 3056098 (+)
G430690 NA non-coding upstream 188196 3036068 ~ 3054700 (+)
G430951 NA non-coding upstream 192602 3049897 ~ 3050294 (+)
G430987 NA non-coding downstream 32903 3280731 ~ 3280990 (+)
G431039 NA non-coding downstream 111949 3359777 ~ 3370252 (+)
G431107 NA non-coding downstream 239695 3487523 ~ 3488001 (+)
G431125 NA non-coding downstream 270226 3518054 ~ 3518312 (+)
G431129 NA non-coding downstream 284066 3531894 ~ 3532107 (+)
CI01000306_02974291_02976718 TP53INP2 other upstream 263739 2973156 ~ 2979157 (+)
G430719 NA other upstream 1091942 2148382 ~ 2150954 (+)
CI01000306_01209847_01210850 ACYP2 other upstream 2024339 1209395 ~ 1211232 (+)
G430452 NA other upstream 2091958 1150597 ~ 1150938 (+)
G430409 NA other upstream 2242994 925544 ~ 999902 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 526316 3772689 ~ 3777550 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other downstream 530224 3778052 ~ 3783019 (+)
CI01000306_03807268_03810946 NA other downstream 560405 3807268 ~ 3811243 (+)
G432583 NA other downstream 1078574 4326402 ~ 4327822 (+)
G432678 NA other downstream 1274354 4522182 ~ 4522536 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003484 otud5b coding NC_007122.7 CM002895.2 25681335 ~ 25689873 (+)