CI01000306_03258305_03268722 (BRPF3A)


Basic Information

Item Value
gene id CI01000306_03258305_03268722
gene name BRPF3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3257223 ~ 3268722 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_03258305_03268722.mRNA
CCGGGATGTATGTTTAGAAACGTTTTTGTAGGAAGTCTCATCAATGGAGGGTTGAGGAAGCCCGTCTTGCTACAGAAGAGGACGCTGTCGCCCCTGGATATGACCGGCATTCCCTATCGTTTCAAGCGATCGATAAAAGAACTGAACTTCTCTATGACCAGAGACACACTTACATATGCGCAAGCTCAGAAAATGGTGGAGATTGAGCTGGAGGGAAGGCTTCACCGGATCAACATCTATGACCAGCTCTCTGTCGTAACCGAGGACGAAATGCTGGCTCAGGATCTGACGGAGTGCAACAGTAACAAAGAGAACAGCGAGCAAAGACAGGGAAACAAACAAACTGTGTCTAAAAACAAGCGGAAAGATGGAAAACACGCAGCCAAAAAGAGATCTGGCTCTCAGTATGGCTTGCAAAGCCAGGTTGCTCATTCGCAAATCCCCCTGCCAAAGCCTACGTTTCGTAAGGTGGACACTTTCACGGCCTCAGAGGCCCCTCCTCTTCCTGTGGCTTATTATCGCTATATGGAGAAGTCAGGGGAGGAGTTGGACAACGAGGCTGAGTATGACATGGACGAGGAGGACATGGCTTGGCTAGAGATGGTGAATCAAAAACGTGTGTCCGACGGCCACGCTTCCGTCCCCCCTGATACTTTTGAATTACTGATTGACCGGCTTGAGCGAGAGTCCATTTTGGAGTCCCGCAGCCAGGCGCTGTCCCAAAGCACCATCGACGAGGATGCCTACTGTTGTGTTTGCCTTGACGATGAGTGTCTCAACAGCAACGTCATCCTGTTTTGTGACATCTGCAACCTCGCCGTGCACCAGGAATGTTACGGGGTGCCTTACATCCCCGAGGGTCAGTGGCTGTGCAGGCGCTGTCTGCAATCCCCGTCACGACCCGTCGATTGTGTCCTCTGCCCGAATCGGGGAGGTGCATTCAAACAAACCAGCGACGGAAGTTGGGCCCATGTCATCTGTGCCATATGGATCCCAGAAGTGTGCTTTGCCAACACCGTGTTCCTGGAGCCCGTGGAGGGAGTGAAGAACATTCCTCCTGCGCGATGGAAGCTCACCTGTTACCTGTGCAAACAGAAAGGCAGGGGGGCGTCTATTCAGTGCCACAAAGCAAACTGCTACAGGGCGTTTCATGTCACTTGTGCCCAGAGAGCTGGTCTCTATATGAAAATCGACCCTGTGCGGGAGACCGGCACGCACGGCACCACTTTTACTGTGAAGAAAACCGCTTATTGCGAGAACCACTCGCCCCCTGGCACGGGCACCGAGGGGGATGAAGACAATGGGTTGGTGGGGGGCAGGGGTAACAGAGGTCAGAGGTCGTACACATTAGGCCCTCCGCTGCAGCAGAACCAGAATGGCCGGAAAAAAGGTTCAGCCACACAACAGAAGAAAACGCAGAAGAACGGGACCTCGCGGAAGACAGGAGTGCCCCTACTGTTGGTGCCGCAGATACCCTCTTTTAGGCTCAACAAGATTTGCACAGGAGTCTCTGTTGAAAGGAAAAATCAGTTTATGCAGAGACTCCACAATTACTGGCTGCTGAAGCGTCACTTTCGCAACGGAGTGCCACTCATCCGCAGGCTCCATTCTCATCTACAGGCTCAGAAGTCTGAGCAGAGAGAGCCAGACACAAAGTTGCAGGCTGTCAGGGAAGAGCTGAAGTATTGGCAGAAGCTTCGACAGGACCTGGAAAAAGCTCGACTTCTTATTGAGCTCATACGAAAGAGGGAGAGACTTAAAAGAGAACAGATGAAACTTCAGCAGGCTGCGCTGGAGCTGCAGCTCACCCCTGCGCTGGTGTTTCTGCGCTCTACACTGGAACAGCTGCAAGAGAAAGACATAGATCATATTTTCACCACACCAGTCAGTTTGAAGGAGGTTCCAGATTATCTGGAGTTTGTTACTGAGCCGATGGACTTCTCTACAATGCATGACAAACTGGAGGCCCATAAATACTCATCAGTGGCTGACTTGGAGAATGATTTCAATCTCATGATATCCAACTGTCTGAGGTACAACTCCAATGACACAGTGTTCCACAAAGCTGCCATGCAACTCCGAGAGGTGGGCGGAGCTATCCTGAGACACGCCCAACATCAGGCTCTCAGCATAGGCCTTGATCCTAGCACAGGCATGCACCTGCCAGATAAGCCCAGCGCGCACAATGCCACAGTCTCCTGGTGGGATGAAGTTGACTTGCTTTTGGACCCTGAAAATCGCGTGCACATGTGTCCTGAGGACCAGCTGAAAACCCTGCTGGACAAACTGGATCTGGTGGCATCTATGCGCACAAGCGGAGGTCGTACAAAACGCATGCGCCTGCTGCGCAGAGAAATTAACAGCCTCCGTCACAAGATCAGCCACCAGGACCGCAACTCACGACTGCTGAATGGGAAAATTAGAGAGGAGAAGAGCAAAGAGGGAAAGAGTGAGGAGAAGATGGATTACATAACCTCTAATACAGACCCCAAAAAATCAACATCACAGAAAGTGCAAAAACCCACTTGCCCAGCCTCTTCACCTTTACCTGGAGATTCTCCACCAAACCCGCCTATGTTCTGCCTTGAGACGGGACGGACCACCACTCCAGCGCAGTCAAATAAACCTGGCAGCAGAAAACAGAGGGCGAAAGGAAAAGAAAGAGGCCTGAGAGAAAATCACGATCAGACTTTAGAAGAAGATGAGAACTTCCACACAAAAGAGGAGGATACCAGCCCTCAGGAGGACACTGTGAGCAGGGTTTCCTCCGCAGAGAGCCTGTCTGATTCACCCAAGATGGGTGTGGGTCGTCGGACATCAATTCTCTTCAAGAAAGCGAAAAATGGAGCCAGACTGACAAAGGACAAGCCTGTTTTATTGCAAAACGGAGTCAGCAAAGCTGAAAATGATGCGTCGCCAGAGCAGACCACACCAGCCAAATTACTGTCAGCACCACCAGCCCCAAAATCGCCCTCTCCGTCCTCTCACCAGCTGAGATCCAGAGGACTGAGTACATGCTCAGACAACGAAGGCTTCACAAATGGACTCAAGAGACACAGCGGCAACTCATCAGATTCAGAAAGCTGCACTCCCACCTTCCCAACACACAGTTCCTCACCTCCAAAACGCAGTCGTGGTAAACCAGCTCTCAGCAAAGTTCCTGTTGGTGAGGAGGAGAATGAAGTTACTAATACAGGCAGAGATACTTCTCAAAATGACGACGAGATGGAACCTCTTACCTTGGTTTGGGCAAAATGTCGTGGGTACCCGTCATACCCTGCAATGATTGTCGATCCTAACATGCCCCGGGAAGGAATTCTTCACAACGGCATTCCCATCCCAGTTCCTCCTACAGATGTTTTGGATCTGGGTAAACGCAGACAGGAGGAGACAGAGGAGAAGCTCTTTCTTGTGCTGTTTTTCGATACAAAAAGAACCTGGCAGTGGCTGCCATTGGACAAGCTCCATCACATGGGCATTGACGACACTGTAGACAGACTGCGTCTGATGGAGGGAAAGAAACCCAATGTGCGGAAGTCAGTGCACATGGCGTACGACAGGGCGATGACACACCTGAGCCATGTACAGGAAAACTCGACTTTTAACCCCTCAAATTTTATATAAAAGACTTCTATCAAATTTTATGTCTAAACTGACTGATACCAATGAAGGTACGTTCATAACATTCAGATGTTTATTGGTTTTTATACCAGTGGAAGGCAGATTCATAAGCTAATTTTTGTCTTCTGCCCTGTTTTCCTACCCTCCAAAACTCAAGGCACATCATAAATCAAAAGCTGGTTTTATTCACTTTTAACATACTCATTCAACCAAGATTTCTATGAATGTTTTAAATTCAGTTGTTTTAATTGCACTTATTTCTTTATGTTGAAAATGTTTTGCCACTCATTCCGTTTTCGGCAGTTTTATTGAATGTGAGGTGATGGTTGTATCACTTATGTTGCCAATGCACCAGGGTGTTTGGGCAGTATGACTCAGGAACTTTGTGCTAGAATGCAACAGTTGTAACAGTTTACTTGGATACATTTCTGGATTGAGTAAATGCATGCACACAAAAAAGTCCTATTGCCCTTAGATTTGCTGGTTAATCATTCTAGCGTGACCACGTATGCTTTTTGTATTTATCAGGTCTGGTGACTACCATAACTGTTTTTACCTACTGTGAGATGCCACTTAATGCTATTTTTTTATTTTTTTTTGGCACTAACATCCAGCATCTATTTTGTCCTTTTTAAGTTAATATGTGCCCGTTTATTTTAAAGAAAGGATGTCTGTGTCGACAAGCTTGTAATTGTGTGTGGAGATCACTGTGTAAATATAAATGCATGTATGTAGAAAATATGCACAAATGTGTTTTTAAAATCTGAAATGTAAATTAATGACAAACTTTGTACATGTCATTTTAATTTATTTGGAGTGGTTATGGAAAAAGTTATTTAATAGTAATTGAGAAGGTTTAATTTAACAGCTCTGTAGAGCTTTATATTGTTCAGAAAGCATTAATGCTTTAATGCAATTGTTCCTTAGAGGTCTTCAGTGAGAGAACATTATAGAATCAAATATTACGTAGTCTCTTAGATCATGTACGCAGAGTAAATAAGAAATGTGTTTTTTAAAGCCTGTGAAAAGCTAATAGTACCAAACAAAAAATGTCTGAAACAGTATTTTCTCAAACGAGAAATAAA

Function

symbol description
brpf3a Predicted to enable metal ion binding activity. Predicted to act upstream of or within chromatin organization. Predicted to be located in nucleus. Orthologous to human BRPF3 (bromodomain and PHD finger containing 3).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K11350 BRPF3; bromodomain and PHD finger-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_03258305_03268722.mRNA True 4706 mRNA 0.47 13 3257223 3268722

Neighbor

gene id symbol gene type direction distance location
CI01000306_03086600_03106758 HCFC1B, HCFC1A, HCFC1 coding downstream 149008 3086510 ~ 3108215 (-)
CI01000306_03070842_03073585 GATA1A coding downstream 183589 3070578 ~ 3073634 (-)
CI01000306_03044394_03045362 NA coding downstream 211018 3043376 ~ 3046205 (-)
CI01000306_03006241_03009198 NA coding downstream 247867 3006190 ~ 3009356 (-)
CI01000306_02966994_02968675 SNAI1A coding downstream 288037 2965937 ~ 2969186 (-)
CI01000306_03278833_03292888 PLCH2B coding upstream 10111 3278833 ~ 3292888 (-)
CI01000306_03296768_03330783 SKIA, SKIB, SKI coding upstream 27001 3295723 ~ 3330783 (-)
CI01000306_03334185_03336292 NA coding upstream 65110 3333832 ~ 3336292 (-)
CI01000306_03357647_03435533 KAZN, KAZNB coding upstream 88925 3357647 ~ 3435533 (-)
CI01000306_03477332_03500721 NA coding upstream 208538 3477260 ~ 3500897 (-)
G432281 NA non-coding downstream 104264 3148940 ~ 3152959 (-)
G432282 NA non-coding downstream 117342 3138791 ~ 3139881 (-)
G432285 NA non-coding downstream 119491 3137285 ~ 3137732 (-)
G432280 NA non-coding downstream 131269 3123477 ~ 3125954 (-)
G432051 NA non-coding downstream 300879 2952249 ~ 2956344 (-)
G432370 NA non-coding upstream 15777 3284499 ~ 3284782 (-)
G432406 NA non-coding upstream 269780 3538502 ~ 3538723 (-)
G432411 NA non-coding upstream 404226 3672948 ~ 3673510 (-)
G432415 NA non-coding upstream 412097 3680819 ~ 3681256 (-)
G432022 NA other downstream 253332 3000236 ~ 3003891 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 1508273 1717933 ~ 1726043 (-)
G431814 NA other downstream 1944789 1311702 ~ 1312434 (-)
G431706 NA other downstream 2093885 1163027 ~ 1163338 (-)
CI01000306_00482506_00494090 PFKLB, PFKL other downstream 2773574 482482 ~ 494090 (-)
CI01000306_04544349_04545034 NA other upstream 1274001 4542723 ~ 4545244 (-)
G433450 NA other upstream 2092921 5361643 ~ 5383763 (-)
G433670 NA other upstream 2772292 6041014 ~ 6041283 (-)
G433985 NA other upstream 2927385 6196107 ~ 6197210 (-)
G434016 NA other upstream 3086458 6355180 ~ 6361643 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location