CI01000306_03270390_03277409


Basic Information

Item Value
gene id CI01000306_03270390_03277409
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3270390 ~ 3277556 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_03270390_03277409.mRNA
CGTCAGTGTCAGTGCAGACCCATCACAGTGGAATTTCACTGCAGACATCATGGTCAGAATCAGCAATATGTCGGGAATTGTCTCTTTAGGCATAGTATTGTTGCTGGGGTCAGAGATCTGCATAGCAGAAGAAAAACACAGCCAAACTTTGCGGGTTCCGGAAACCCGGAAGCTGCCTAAGAGGGCATCAAACGCAGCCGTGCCATTCACTCATCATTATCTCCCTGAGATTCGCAGACTGAGCGAGGATGTGGCTTTTTTGCTAAAGATGGCTGCCGAACAAAAGCAAGACCCCTACACAATGAGCAAAGGTTCGCAGTTAGAAGGCTACTGTATGGATCTGCTCACTGAGCTGGCTAAGAAACTGGGTTTCAAATACAAAGTTCACCTGGTGAAAGACGGATCGTATGGCCGGCAGGATGAAAGTGGAAACTGGAACGGAATGATTGGGGAGGTTGTTAGAGGGGAAGCCGATCTCGCCGTGGCTCCCCTCACTCTCACCGCTGCCCGCGAGAAGGCTGTGGGAATGACAAAACCTTACATGCAGACCGGAATCAGTATCCTCCTCCGCAAAGATATCGTTTCTGAGGAGGCCGGCTTTTTTGACTTCCTCTCCCCCTTCTCTGGGGAGACCTGGTTCGGCATCCTGATTGCATACTTTGTGACTGCAGTCTGCATCTGCATTGTGGGAAGGTTGAGTCCATGTGAATGGAGTCAGCCGGAGACAGAGCCAAATCGCTTCACACTCCTCCACAGTTTATGGTACGCTGCAGGAGCCCTCAGTCTGCAAGGTGCAGGCCCTCACCCTAAAGCTCTGTCAGGAAGGGTTATCAGTTGTACCTGGTGGTTGTTTGCCGTCGTGCTCCTGGCTTGTTATTTTTCCAGTCTTAGTTCCTCTCAGGGGTCTGACTCTGCTCCGCTCATGATTAAAGGGTTCGAGGACTTGGCCAATCAGGAAGTAATAGAATATGGAACACTTGCTGGCTCCTCCACCCTCGCCTTCTTTAAGAACTCAAATAACCCATCTTACCGTCGTATCTATGAGCACATGGAGCGCAGGAAGAGTTTTGTGTCCTCCATGGATGAGGGTGTCCAGAGAGCAAAGGAAGGAAATTATGCTTTCATTGGAGAATCGGTGTCCCTGGATTTGGCTGTGGCACGGCATTGTGAACTGGTCCGTGCGCATGAGGTCATCGGGATGAGAGGTTACAGCATTGTAACTCCTCTCGGATCTCCTATGCTGAAGAACCTGAGCGTGGCCATCCTGCAGCTGAGCGAGGCTGGGGAGCTGGCGTATCTGCGCACTAAGTGGTGGGCCAGCAGCTGTATACCGGACAGTGCCAAAGCATTGTCTCTGAGGGCTCATAGCATGAAGGGCATATTCCTGGTTCTGGCTATAGGCCTTGGGATTGGAGTGCTGCTCTCCTTGTTTGAACTCACCTCAAAGTCTCGCAGCACTGCAGGGGAGCAGAAGGCAACATGTCCATATCCGTCACAGTAACTGTGGTGTGGAATTTTGTTTTCTGTTTCTTTTTAGGTTTCACATGCATGCTTTTTCTACAATGTTGAGGAATCTAAAAAAAAATACAAAAACAAAATTAAAGCCCTACCACAAATTAAACTCAGTCAAATTTCTACTGAGGTAGAA

Function

GO:

id name namespace
GO:0006810 transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_03270390_03277409.mRNA True 1648 mRNA 0.50 10 3270390 3277556

Neighbor

gene id symbol gene type direction distance location
CI01000306_03248839_03256675 MON1BB, MON1B coding upstream 13327 3248839 ~ 3257063 (+)
CI01000306_03244498_03247567 OTUD5B, OTUD5, OTUD5A coding upstream 22562 3242896 ~ 3247828 (+)
CI01000306_03219408_03238461 GRM7, GRM6B coding upstream 31916 3219408 ~ 3238474 (+)
CI01000306_03214469_03216852 COMTB coding upstream 53510 3214469 ~ 3216880 (+)
CI01000306_03196205_03203310 CCDC120 coding upstream 66228 3196205 ~ 3204162 (+)
CI01000306_03612105_03612431 NA coding downstream 334249 3611805 ~ 3612761 (+)
CI01000306_03642939_03646831 PPCS coding downstream 365383 3642939 ~ 3647153 (+)
CI01000306_03658929_03661523 RBM12 coding downstream 381084 3658640 ~ 3662015 (+)
CI01000306_03666143_03671601 NA coding downstream 388587 3666143 ~ 3672675 (+)
CI01000306_03677906_03697637 NA coding downstream 400350 3677906 ~ 3697792 (+)
G430931 NA non-coding upstream 31619 2883891 ~ 3238771 (+)
G430716 NA non-coding upstream 171031 3098644 ~ 3099359 (+)
CI01000306_03048314_03055936 NA non-coding upstream 214320 3048314 ~ 3056098 (+)
G430690 NA non-coding upstream 215690 3036068 ~ 3054700 (+)
G430951 NA non-coding upstream 220096 3049897 ~ 3050294 (+)
G430987 NA non-coding downstream 3175 3280731 ~ 3280990 (+)
G431039 NA non-coding downstream 82221 3359777 ~ 3370252 (+)
G431107 NA non-coding downstream 209967 3487523 ~ 3488001 (+)
G431125 NA non-coding downstream 240498 3518054 ~ 3518312 (+)
G431129 NA non-coding downstream 254338 3531894 ~ 3532107 (+)
CI01000306_02974291_02976718 TP53INP2 other upstream 291233 2973156 ~ 2979157 (+)
G430719 NA other upstream 1119436 2148382 ~ 2150954 (+)
CI01000306_01209847_01210850 ACYP2 other upstream 2051833 1209395 ~ 1211232 (+)
G430452 NA other upstream 2119452 1150597 ~ 1150938 (+)
G430409 NA other upstream 2270488 925544 ~ 999902 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 496588 3772689 ~ 3777550 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other downstream 500496 3778052 ~ 3783019 (+)
CI01000306_03807268_03810946 NA other downstream 530677 3807268 ~ 3811243 (+)
G432583 NA other downstream 1048846 4326402 ~ 4327822 (+)
G432678 NA other downstream 1244626 4522182 ~ 4522536 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003486 si:dkey-183j2.10 coding NC_007122.7 CM002895.2 25735478 ~ 25750060 (+)