CI01000306_03778075_03781910 (MAP1LC3A, MAP1LC3A.L)


Basic Information

Item Value
gene id CI01000306_03778075_03781910
gene name MAP1LC3A, MAP1LC3A.L
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3778052 ~ 3783019 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_03778075_03781910.mRNA
TGAGTCAGGAGCTCGAAAAGAAGCGAAGTCGACCGAGGATTTAACATATAATAGCTCCTTTTTACCACATTCAAGTCCAGTTATGCCGTCTGACAGACCCTTCAAACAAAGACGGAGCTTTGCTGATCGTTGCAAGGAAGTGCAGCAGATACGAGAGCAGCATCCCAATAAAATTCCGGTGATCATTGAGAGATATAAGGGGGAAAAGCAACTTCCCGTCTTGGACAAGACAAAATTCCTTGTCCCTGACCATGTTAACATGAGTGAGCTGGTAAAGATAATCAGGCGTAGACTGCAGCTCAACCCCACCCAGGCCTTTTTCCTTCTTGTCAATCAGCACAGCATGGTCAGTGTGTCCACCCCCATTTCTGAGATCTACGAACAAGAGCGAGATGAAGATGGCTTCCTCTACATGGTTTACGCCTCCCAGGAGACCTTTGGTTGCTAAGCAGGCCACTCGACCTTTGAGGGAGGGATAGCAGAGGGAGGGAAAGACAGCAACAGGAAGCAGGCTCACCCAAATGTACCCGTTCTTTCTCTCTCCATCATCACTGCTCCTCCCTTGCTGGTATGAAATGAA
>TU495118
GTCTCGAGCTGTTTTGCTTACAGTGAGTCAGGAGCTCGAAAAGAAGCGAAGTCGACCGAGGATTTAACATATAATAGCTCCTTTTTACCACATTCAAGTCCAGTTATGCCGTCTGACAGACCCTTCAAACAAAGACGGAGCTTTGCTGATCGTTGCAAGGAAGTGCAGCAGATACGAGAGCAGCATCCCAATAAAATTCCGGTGATCATTGAGAGATATAAGGGGGAAAAGCAACTTCCCGTCTTGGACAAGACAAAATTCCTTGTCCCTGACCATGTTAACATGAGTGAGCTGGTAAAGATAATCAGGCGTAGACTGCAGCTCAACCCCACCCAGGCCTTTTTCCTTCTTGTCAATCAGCACAGCATGGTCAGTGTGTCCACCCCCATTTCTGAGATCTACGAACAAGAGCGAGATGAAGATGGCTTCCTCTACATGGTTTACGCCTCCCAGGAGACCTTTGGTTGCTAAGCAGGCCACTCGACCTTTGAGGGAGGGATAGCAGAGGGAGGGAAAGACAGCAACAGGAAGCAGGCTCACCCAAATGTACCCGTTCTTTCTCTCTCCATCATCACTGCTCCTCCCTTGCTGGTATGAAATGAAATAAAACCGTTGATTCTTGTCTGTGACACTACAGTGCAAACCACAGCACTAATGTAAACACTATTCTGACCCATTTTAAACTTAGTTGTTTTCCTTTATAAGCTCAGCGTAGGTATTACACTGTTTATACTTTGTATTTGGGCCTAGTAGCTTTTTTCCCCTTGCGTTTTATTACTTTTAGGCCGTTATGTCAAATAATTAGTAACACATATTGCTGTAAATAGGTGTGTGTGTTTTTCTTTTTTTTTTTTTAGGATTAATTTGCTTTTCCTGTCTGTTTGCTTGTAGTAATTACCAGACCTTAGTGGTGCTGGTGTAAGATTGTACAATCTTACTTCAGAATTAAGTGCTTATTTAAACCAAGTAATTAATCAAGATGCAGCGTAATTCTCATCAAATTTCCTGTTAGACCCATTCTGTGGTTCTCAAAACAAAACGGTAAGGAGACCAATGGCTCCAAAGGTGTAATTATAAAAATTATTTGAACTATCAGAGGGTTTCTGAAGCCTTTATGAGCCTGTGTTTATTTCTGGGCTCCTGTGTAAAAATAACTCCTCATTAACTCATTGTAGAATAAAGATATTGCCTGACAGTAACTGTAGTCAAAAGCCACATTGATCTGTACTGTACACGTGTGAGCCAGAAGAACATCTTTTGGCATACAGTATTCTGCAGTCAGCCTCACATAATCTTTAGTAGATGCGAATAAAATGCTTTTTTTGCACAATTAAAACATCTAAGAGGACAACTTATTAGAAGTTCAACAATTATAGCACATAATTATATTCACATTTATACTTGTTTTTTTCCTCCTGTGTCACCATACGAGCTGTATGCCTTCTGTTAAATCTCAGATGAAAGGATTGTGATGCTCTACTTTGCATGTTTTTTCTCAACCTTTTTTATATTGATTTTATGCTATAGATTTAATTATTTCAGCTTTATTTAAAGAAAAACAAACTGAGACTTTTTATTAG
>TU495119
GTCTCGAGCTGTTTTGCTTACAGTGAGTCAGGAGCTCGAAAAGAAGCGAAGTCGACCGAGGATTTAACATATAATAGCTCCTTTTTACCACATTCAAGTCCAGTTATGCCGTCTGACAGACCCTTCAAACAAAGACGGAGCTTTGCTGATCGTTGCAAGGAAGTGCAGCAGATACGAGAGCAGCATCCCAATAAAATTCCGGTGATCATTGAGAGATATAAGGGGGAAAAGCAACTTCCCGTCTTGGACAAGACAAAATTCCTTGTCCCTGACCATGTTAACATGAGTGAGCTGGTAAAGATAATCAGGCGTAGACTGCAGCTCAACCCCACCCAGGCCTTTTTCCTTCTTGTCAATCAGCACAGCATGGTCAGTGTGTCCACCCCCATTTCTGAGATCTACGAACAAGAGCGAGATGAAGATGGCTTCCTCTACATGGTTTACGCCTCCCAGGAGACCTTTGGTTGCTAAGCAGGCTCACCCAAATGTACCCGTTCTTTCTCTCTCCATCATCACTGCTCCTCCCTTGCTGGTATGAAATGAAATAAAACCGTTGATTCTTGTCTGTGACACTACAGTGCAAACCACAGCACTAATGTAAACACTATTCTGACCCATTTTAAACTTAGTTGTTTTCCTTTATAAGCTCAGCGTAGGTATTACACTGTTTATACTTTGTATTTGGGCCTAGTAGCTTTTTTCCCCTTGCGTTTTATTACTTTTAGGCCGTTATGTCAAATAATTAGTAACACATATTGCTGTAAATAGGTGTGTGTGTTTTTCTTTTTTTTTTTTTAGGATTAATTTGCTTTTCCTGTCTGTTTGCTTGTAGTAATTACCAGACCTTAGTGGTGCTGGTGTAAGATTGTACAATCTTACTTCAGAATTAAGTGCTTATTTAAACCAAGTAATTAATCAAGATGCAGCGTAATTCTCATCAAATTTCCTGTTAGACCCATTCTGTGGTTCTCAAAACAAAACGGTAAGGAGACCAATGGCTCCAAAGGTGTAATTATAAAAATTATTTGAACTATCAGAGGGTTTCTGAAGCCTTTATGAGCCTGTGTTTATTTCTGGGCTCCTGTGTAAAAATAACTCCTCATTAACTCATTGTAGAATAAAGATATTGCCTGACAGTAACTGTAGTCAAAAGCCACATTGATCTGTACTGTACACGTGTGAGCCAGAAGAACATCTTTTGGCATACAGTATTCTGCAGTCAGCCTCACATAATCTTTAGTAGATGCGAATAAAATGCTTTTTTTGCACAATTAAAACATCTAAGAGGACAACTTATTAGAAGTTCAACAATTATAGCACATAATTATATTCACATTTATACTTGTTTTTTTCCTCCTGTGTCACCATACGAGCTGTATGCCTTCTGTTAAATCTCAGATGAAAGGATTGTGATGCTCTACTTTGCATGTTTTTTCTCAACCTTTTTTATATTGATTTTATGCTATAGATTTAATTATTTCAGCTTTATTTAAAGAAAAACAAACTGAGACTTTTTATTAG

Function

symbol description
map1lc3a Predicted to enable microtubule binding activity; phosphatidylethanolamine binding activity; and ubiquitin protein ligase binding activity. Predicted to be involved in autophagy of mitochondrion; cellular response to nitrogen starvation; and macroautophagy. Predicted to act upstream of or within autophagy. Predicted to be located in membrane. Predicted to be active in autophagosome membrane and cytosol. Is expressed in forerunner cell group; nervous system; neural tube; and tail bud. Human ortholog(s) of this gene implicated in glioblastoma. Orthologous to human MAP1LC3A (microtubule associated protein 1 light chain 3 alpha).

GO:

id name namespace
GO:0005543 phospholipid binding molecular_function

KEGG:

id description
K10435 MAP1LC; microtubule-associated protein 1 light chain

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_03778075_03781910.mRNA False 580 mRNA 0.48 4 3778075 3782042
TU495118 False 1580 TUCP 0.39 4 3778052 3783019
TU495119 True 1521 TUCP 0.38 5 3778052 3783019

Neighbor

gene id symbol gene type direction distance location
CI01000306_03772689_03777211 DYNLRB1 coding upstream 552 3772689 ~ 3777550 (+)
CI01000306_03704267_03746574 UNM_SA1614 coding upstream 31154 3704267 ~ 3746921 (+)
CI01000306_03677906_03697637 NA coding upstream 80283 3677906 ~ 3697792 (+)
CI01000306_03666143_03671601 NA coding upstream 105400 3666143 ~ 3672675 (+)
CI01000306_03658929_03661523 RBM12 coding upstream 116060 3658640 ~ 3662015 (+)
CI01000306_03807268_03810946 NA coding downstream 25226 3807268 ~ 3811243 (+)
CI01000306_03827847_03828735 NA coding downstream 43695 3825737 ~ 3828845 (+)
CI01000306_03889176_03889334 NA coding downstream 106306 3888348 ~ 3889371 (+)
CI01000306_04050451_04054257 NA coding downstream 268290 4050332 ~ 4054402 (+)
CI01000306_04077126_04078242 NA coding downstream 295084 4077126 ~ 4078531 (+)
G431231 NA non-coding upstream 6679 3771158 ~ 3771396 (+)
G431228 NA non-coding upstream 7829 3769997 ~ 3770246 (+)
G431226 NA non-coding upstream 10682 3767162 ~ 3767393 (+)
G431134 NA non-coding upstream 181706 3538785 ~ 3596369 (+)
G431130 NA non-coding upstream 240620 3532604 ~ 3537455 (+)
G431243 NA non-coding downstream 6937 3788979 ~ 3789321 (+)
G431242 NA non-coding downstream 8734 3790776 ~ 3791987 (+)
G431249 NA non-coding downstream 15629 3797671 ~ 3797894 (+)
G431251 NA non-coding downstream 18174 3800216 ~ 3800611 (+)
G431252 NA non-coding downstream 18592 3800634 ~ 3800857 (+)
CI01000306_02974291_02976718 TP53INP2 other upstream 798918 2973156 ~ 2979157 (+)
G430719 NA other upstream 1627121 2148382 ~ 2150954 (+)
CI01000306_01209847_01210850 ACYP2 other upstream 2559518 1209395 ~ 1211232 (+)
G430452 NA other upstream 2627137 1150597 ~ 1150938 (+)
G432583 NA other downstream 544360 4326402 ~ 4327822 (+)
G432678 NA other downstream 740140 4522182 ~ 4522536 (+)
G432958 NA other downstream 1876886 5658928 ~ 5660169 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other downstream 2198471 5975822 ~ 5986288 (+)

Expression


Co-expression Network