CI01000306_04489350_04503649 (ALPL)


Basic Information

Item Value
gene id CI01000306_04489350_04503649
gene name ALPL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 4489350 ~ 4505749 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_04489350_04503649.mRNA
ATGAAGGTCGCTGCTCTCCTTATCCTTGGTTGTCTGGTTTGGGAAGGACTGGCAAAGCCTAAGTTTCCAGAACAAGAGAAGGACCCTAATTTCTGGAAGGGCTTGGCTCAAAGCTCACTAAAAAATGCTTTGACCCTCCAAGAGCTCAACAAGAACATTGCCAAGAACGTCATCCTTTTTCTTGGTGATGGTATGGGTATATCTACGGTCACAGCAGCACGGATTCTAAAGGGTCAAATGAGTGGAAAGAGCGGTGAGGAAACACAACTGGAGATGGACAAATTCCCCCATGTTGCCCTCTCTAAGACATATAACACCAATGCTCAGGTACCAGACAGTGCAGGCACTGCCACGGCATATCTGTGTGGGGTCAAAGCCAACGAGGGTACAGTTGGAGTGAGCGCAGCAGCTGTGAGATCCCAGTGCAACACCACTCAGGGGAACGAGGTCACCTCCATTCTTAAATGGGCCAAAGACGCAGATAGTCGAGGGAAAAAATATGTAATCAACAAGAATATAGATATAGTGGTAAACAAGGACATGTCCCTACAGGAACAATTAACAGTTAGTTGCAACTACCTGTATTTTTCCCAAGGCAAATCAGTGGGCATTGTCACAACAACACGAGTAAACCATGCCACTCCGAGTGCCGCATATGCCCACTGTGTAGATCGGGACTGGTATTCAGACGGGGAAATGCCACCTGAAGCACTGCAGAGTGGATGCAAAGACATTGCCAGACAACTCTTTGAAAATATCCCTGACATTAATGTGATTATGGGGGGTGGGCGGAAATATATGTACCCCAAAAACACACCAGATGTGGAATACCCAGGAGACAAGAAACACAACGGTACACGCAAAGATGGCAGGAACCTTGTGGGGGAGTGGATTGACAGAGTGAAGGATAAGAGAGGTTACTATGTTTGGAACAAGAGGGATCTCCTTTCCCTGAATCCAAATAATGTGGATTATCTGTTGGGTCTGTTTGAGCCGGCAGATTTGGCCTATGAGCTTGAGAGAAACAAAGACGCTGACCCTTCCCTCACTGAGATGGTAGAAGTGGCCATTAAGATCCTCAGAAAAAATGAACGCGGGTTCTACTTGTTGGTCGAAGGTGGGCGCATTGACCACGGACACCATGAAGGCAAAGCGAAGCAGGCCTTACATGAGGCAGTGGAAATGGATTTGGCCATTACTCGAGCTGGTCTCCTCACCAGTGTTCATGACACACTAACCGTCGTCACGGCTGATCACTCTCATGTCTTCAGCTTTGGAGGCTACACACCACGAGGAAACTCAATCTTTGGTTTGGCCCCCATGATGAGTGATATTGACCAGAAGCCCTTCACATCCATTTTGTATGGAAATGGCCCAGGGTTCAAGTTTGTTAACGGATCTAGAGAAAATGTCTCAACTGTGGACTACGAGCACAACAACTATCAGGCTCAGTCTGCCGTTCCCTTGAGCATGGAGACTCATGGCGGTGAAGACGTGGCCATCTTCTCCAAAGGCCCCATGGCTCATCTTCTTCATGGAGTCCAGGAGCAGCATTACATTCCTCATGTCATGGCCTACGCCGCTTGCATCGGCCAAAACAAAGACCACTGCCGTACAACCTCCGGCTCCTCTTCTCTCAGCCACATCTCCCCTACGCTGGCCATCCTTCTTTCAGTTACATGGTTTCTGTGCTGACCTCTCTCTTGTATCCTACCGTGATTAGATCAGGAACTGAGTTTATGATTTTTTTGTAATATGTGATTAGTTTTTAAAGCATTTATCAACTTCAGGACCAATGTGTGGGCATTTTAGATAGGCTGAAGATGTGAAGAGATTCTGTTGCAATGATGGAAACAAAATGTAAAATGTCTTTTTTTTTTTTTTTTACTTGCCATTTAAGCGACATCACACAAGTACGGTGTTGTGAATACCAGAACTGCTGTGATTCAGTACAGCAATGCAAATGTGAGCGTGATATTGCTGTTCTCTAAAGAACATAATAATGAATAATTGTGATAAAATCTGGCCAGCAAAAATACTTAAGAAGGACGCCAAAAGAAAAATATCACGCTTTCTGTATCGCAAGGCAACAGGCAGATTGACAGTCTGTCTGGAACAGATAATGCAAAATAGAGGATCGGAACTAACTATTGTTTAGCAAGCTCACATTACACAGTTTTAGCTCTGAAAAGTCACATGAGATCAGTAAGATTTTTTTTTTTTCTTTTTGGAAAGAATTCAATGTACTCAACAAGGATGCATTAAATTGATTAATTTTTAAAAACATTTGTTACACAAAAGATTTCTAGTTAAATAAATGCTTTTGAACTTTCTATTCATCAAGAAATCCTAAAAATCCTATCATAGTTTCCACAAAAAAAATAAGCAGCACATTAATAGTAAACATTAATAGTAAAAAGAGATGTTTCTCGAGAACTAAATCAGCATATTAGAATGATTTCTGAAGGATCCTGTGACACTTAATAATAAAGTATATTAAAATAGAAAACTGTCTTTAAATTGTAATAATATTTCACAAAAAAATTTTTTTTTACAGAGCACCTAAAGGGACATTGTGGTGGAAAAACTTTGGGATGGGAGAAAAAAATATATTTCAATGCTTTTGCATTGCTCGCAAAAGTTTTGTGTTCCCTCTAGAAACTTTGCGTTCGCTCGCAAAAAAAAGGTTTTGCAACCCGAACACAAAGTTTCATGGGTGAACACAAACATTTTTGCGAGCAAACACAAACTTTCTTGGGTGAACGCAATAGTTTTGCGAGAGAATGCAAAAACATTAACATATCATTTTTCCTCCCATCTCATATTTTTTCCATCACTTTGTCCCTTTAGGGGCTCCATAGTTTTTACTGTATTTTTTACTGTATCAAATAAATGCAGCCTTGTTGACCATAAGAGAGACATACTGTCCCAGGTGAAAAAAAAAAAAAAGTACATTTCTATAATGTATCTAAAGTGCTCTATTTTTGCGCACTAATTTTGTACTTAATATACTAAAAATTGTTCTTTAGTACTTCTTAAGGTAATCTTAAGAACATCTAAGTGTACTCAACTGTGCTATTTTGAGACACCATGAAATATAAACTAAAATGTGCTTTTAATATACTACCTCTGTATTTAAAAAAAATGTATTTGGATACTACTTATAGTACATTTGAACCCTGGTTTCACAGACAAGGCTTAAGCTAGTCCTAGACTAAAATGCATGTTTGAGCGGTTTTAAACTGAAAGAAACTTGTACTGACATATCTTAAAATACGTCCCTGCCATTGTTTTTTTTCTCAAGATGCACACAAGTAATATTTTTTTCTAGTGTACGTTTATAAAAGCTACTGTCTGTGAAACCGGGCCATAGTGTACTACAAGTGGTAACTAAATATAGTTTTTAAATACAGAGATCGTATATTAAAAGCACATTTTAGTTCATATTTCATGGTGTCTCAAAATAGCACAGTTGAGTACACTTAGATGTTCTTAAGATTATCTTAAGAAGTACTAAAGAAGAATTTTTAGTATATTAAGTACAAAATTAGTGCGCAAAAATAGAGCACTTTAAGTACATTATAGAAGTGTACTTTTTTTCCACTGGGTGAGCCCAAACTTTTGAACAGTAGTGTGTGTCAGCAGATGTTTTAATGATGATAAGATGTACAGAATAATTACAACACCGTTCTTTTCAGAAGATGTGGACAGTGAGTTTGAGAGCTGTGCAGTGTGAGCTTGGTCAGCAAAGCGATTAAATTAAATGAGTAGAACTATAACAAGAATATTCATTAA

Function

symbol description
alpl Predicted to enable alkaline phosphatase activity. Acts upstream of or within response to mechanical stimulus. Predicted to be located in membrane. Predicted to be anchored component of membrane and integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including anterior neural keel; bone element; central nervous system; gut; and vasculature. Human ortholog(s) of this gene implicated in adult hypophosphatasia; childhood hypophosphatasia; hypophosphatasia; and infantile hypophosphatasia. Orthologous to human ALPL (alkaline phosphatase, biomineralization associated).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01077 E3.1.3.1, phoA, phoB; alkaline phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_04489350_04503649.mRNA True 3795 mRNA 0.39 11 4489350 4505749

Neighbor

gene id symbol gene type direction distance location
CI01000306_04454619_04454783 NA coding upstream 33798 4454619 ~ 4455552 (+)
CI01000306_04253810_04255748 BARX1 coding upstream 232509 4253163 ~ 4256841 (+)
CI01000306_04111278_04162816 FBLN2 coding upstream 325506 4110793 ~ 4163844 (+)
CI01000306_04077126_04078242 NA coding upstream 410819 4077126 ~ 4078531 (+)
CI01000306_04050451_04054257 NA coding upstream 434948 4050332 ~ 4054402 (+)
CI01000306_04570147_04574537 NMUR3 coding downstream 64034 4569783 ~ 4574728 (+)
CI01000306_04686121_04753101 EPHB2, EPHB2B coding downstream 180372 4686121 ~ 4753101 (+)
CI01000306_04789240_04793134 LRRC38, LRRC38A coding downstream 282421 4788170 ~ 4794154 (+)
CI01000306_04859604_04861501 NA coding downstream 353789 4859538 ~ 4861570 (+)
CI01000306_04863197_04868703 NA coding downstream 357448 4863197 ~ 4868794 (+)
G432586 NA non-coding upstream 69721 4418192 ~ 4419629 (+)
G432568 NA non-coding upstream 127119 4360581 ~ 4362231 (+)
G432571 NA non-coding upstream 141479 4345029 ~ 4347871 (+)
G432629 NA non-coding upstream 181657 4307346 ~ 4307693 (+)
G432628 NA non-coding upstream 182010 4307121 ~ 4307340 (+)
G432672 NA non-coding downstream 3690 4509439 ~ 4509709 (+)
G432680 NA non-coding downstream 24568 4530317 ~ 4530526 (+)
G432697 NA non-coding downstream 61861 4567610 ~ 4567836 (+)
G432703 NA non-coding downstream 74848 4580597 ~ 4586360 (+)
G432745 NA non-coding downstream 316401 4822150 ~ 4822382 (+)
G432583 NA other upstream 161528 4326402 ~ 4327822 (+)
CI01000306_03807268_03810946 NA other upstream 680352 3807268 ~ 3811243 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other upstream 706331 3778052 ~ 3783019 (+)
CI01000306_03772689_03777211 DYNLRB1 other upstream 711800 3772689 ~ 3777550 (+)
CI01000306_02974291_02976718 TP53INP2 other upstream 1510193 2973156 ~ 2979157 (+)
G432678 NA other downstream 16433 4522182 ~ 4522536 (+)
G432958 NA other downstream 1153179 5658928 ~ 5660169 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other downstream 1474764 5975822 ~ 5986288 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other downstream 1600394 6106143 ~ 6108175 (+)
G433724 NA other downstream 1602862 6108611 ~ 6129778 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location