CI01000306_04544349_04545034


Basic Information

Item Value
gene id CI01000306_04544349_04545034
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 4542723 ~ 4545244 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_04544349_04545034.mRNA
ACGTAGCATTTATGAATTCTGTTTTACGACATTGTAAAACTTATCCTCTTTATTCATTAACAGCAAAGAAACAATGGCAGGTTCTGATAGGTTGCTCGTCTGGGACCGTTTCCTTTATAAGAGGAGACAGAACGTGGAGAAAGGCAGAGATTGCCGTGACAACAACCTAAAAACATACTAAACTAAACCTCTCGAGAAGAACCAGCCAGCATGAAGACCGTCCTGTGTGTCGCTTTCCTCGTTGTGGCTCTTTGCCTGGTCTGTGAGGCTGTGCAAGTCCAGGAAGGTGATTTTTCCTTTTCATTGGACTCTGTGAAAATCCTCCAGCAGCTGACCGATCAACAAAAACCACAAACACAAAACCCACGGCTGGCCAAGACGAGCTACTTTTCTGTGTGTTCCAATCCAACTCTGCCACAGGAGTTTGTGCCCCTGTGCATGCAGAAAGGAGCAACAATGTCCCTTGCTAGACTAGCATCTGTGAATGTGGACATCTGTGAAATATGTGCTTTTGCGGCTTGTACCGGCTGCTAATTCTTCCCAATGCTTGATCATCCTCACCTCCACTTAATAAA
>TU497393
GCCGTGACAACAACCTAAAAACATACTAAACTAAACCTCTCGAGAAGAACCAGCCAGCATGAAGACCGTCCTGTGTGTCGCTTTCCTCGTTGTGGCTCTTTGCCTGGTCTGTGAGGCTGTGCAAGTCCAGGAAGGTGATTTTTCCTTTTCATTGGACTCTGTGAAAATCCTCCAGCAGCTGACCGATCAACAAAAACCACAAACACAAAACCCACGGCTGGCCAAGACGAGCTACTTTTCTGTGTGTTCCAATCCAACTCTGCCACAGGAGTTTGTGCCCCTGTGCATGCAGAAAGGAGCAACAATGTCCCTTGCTAGACTAGCATCTGTGAATGTGGACATCTGTGAAATATGTGCTTTTGCGGCTTGTACCGGCTGCTAATTCTTCCCAATGCTTGATCATCCTCACCTCCACTTAATAAAATATGCATATTTTCAATCAATGCCATAAGTTCTCATAGTTGACTATATGAACATTGCCAATGTTGCCTAAATGGCAAAACTGAAAATGACAGCACACTGTTTATGAACTGTTACTTAAACTTCCTTCCCCTCTTTCCTTTCCCATATTTTGTTTTGTTACAGCACATATTTCATTTATTTAAGAAAGAAGTGTCTTTTTTATTTTTTCTATTTCTCAGTTTTGCTGGGTTTTATACTCCTCTGTGTGTGGTAATACCTCAGTGTTCAATAAAATGCTTTGAAAATCTGTTCTCTTTGCTTTGTGTGTATTATTTTTATTGTTGAAAGAATTTTATTGACATTAGAAAAATGTTATTTGAGATTTACAGCCTCAATAAGTTCTTGATAACACTTTAGAATAATGGACCAGTATTTTAAAGTGAAAAACTTTTTTTTCCCCACTTTAAAATAATGGGCCAGGTCCCTAGTATAGGTGTTGAAGAGTGACTAGGTAGACAATTGCTCATAGTGATGCATTTTATGCCCATGTTCAGAGTACCATTATTCTAAAGTGTTACCCTGTTGTCTTTGCAGTGTGTGTATTTTTAATATAGAAAGAATATGATTGACATTACAAAAGTGTTATTTGGTTTTTACAGCCAAATCTAGGCAATTAGTTCATTTTAATGGAAGAAAAATATTCAAAATGAGTAATTGGTGCTCAGGATGTCTGATGTCAACCATTTCATTCCAAGTGTATCTCACTTTTTGACTGACATGAGAGTAGCAGACTACCTCATGTTTATATTCTGTATCCTGTCAATTTGAAAGCAACATGTGCCACGATTTCTTGATGCGGTTTGGTGGGCCGTTGCTCATGAAAGATTTATTGAATGCTGAGTGACACGACCATTAAGAGTGTATTTACTGATAGATGTCTGCAGGAAACTACTTCACTGCTCATTTAAATATTCTATTTTTTTCATTAACTACTTGAAATGAAACCTTTCAGGCATGAATCTCTGCCTGTGTGAGTTTGAGCAGCATGGATGTGTCTGTGATGAAACCTTTCTGCTGAGTGCATGTAGGCAGTACATCAGTCACCCTGACGTAACACATATTCTTGATCATTTGTAGGCCACATAAAAGCCCAAACCTGTATGCTGCGCAACATTTTCTGCATAAAAGCAGTCACGTATTTTGATGTCCTGTGCTTTGAGTAAAAATTGATTAAGTACAATGTTCTTTCTGCATGTTTACTCGTAAGCTCAGGGAAGAAGCTGCAGGCTGCTGATGGAACTATAATTTGCCTGTTTTGAAAGCTTCAGTGAAATAGTGAACAACAGAATGGAAAGTACACCATTTCCTTCACTATAGAGGTTTTGGCCATTAAGGAGGACTTCTAAGTCCAACTACAACAAGCCCAAAACGAACAGTAATGAAGTCGTTAAGTGACAGGTGAAGTGAAGAACACTGATTATCTCTTCATCATTGCACCTGTTAATGGGTGGGATATATTAGACAGCAAGTGAACAAGAACAAGTTGTCTTCAAAGTTGATGTGTTAGAAGCAGAAAAAATGGGCAAGCATAAGGATTTGAGCGAGT

Function

NR:

description
Guanylin precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_04544349_04545034.mRNA False 575 mRNA 0.45 3 4544308 4545244
TU497393 True 2008 TUCP 0.38 3 4542723 4545092

Neighbor

gene id symbol gene type direction distance location
CI01000306_04537146_04540022 NA coding downstream 3584 4536135 ~ 4540724 (-)
CI01000306_04457122_04472763 ECE1 coding downstream 71545 4456419 ~ 4472763 (-)
CI01000306_04393554_04421160 EIF4G3, EIF4G3A coding downstream 123148 4393197 ~ 4421160 (-)
CI01000306_04387480_04391796 CSTF1.S, CSTF1 coding downstream 152512 4387010 ~ 4391796 (-)
CI01000306_04361825_04366757 NA coding downstream 177551 4361544 ~ 4366757 (-)
CI01000306_04577230_04587283 LACTBL1, LACTBL1B coding upstream 31449 4576693 ~ 4588427 (-)
CI01000306_04806459_04809719 NA coding upstream 260598 4805842 ~ 4810251 (-)
CI01000306_04848327_04856522 DHRS3B, DHRS3, DHRS3A coding upstream 303083 4848327 ~ 4856522 (-)
CI01000306_04870702_04872912 KLHDC7A coding upstream 325284 4870528 ~ 4872937 (-)
CI01000306_04883506_04908414 NA coding upstream 338159 4883403 ~ 4909520 (-)
G433271 NA non-coding downstream 21764 4522217 ~ 4522544 (-)
G433259 NA non-coding downstream 43633 4457849 ~ 4500675 (-)
G433203 NA non-coding downstream 203625 4340401 ~ 4340683 (-)
G433223 NA non-coding downstream 281482 4262620 ~ 4262826 (-)
G433193 NA non-coding downstream 288254 4253472 ~ 4256054 (-)
G433281 NA non-coding upstream 14322 4559566 ~ 4559868 (-)
G433288 NA non-coding upstream 207763 4753007 ~ 4758402 (-)
G433393 NA non-coding upstream 255172 4800416 ~ 4805206 (-)
G433411 NA non-coding upstream 315036 4860280 ~ 4861581 (-)
G433412 NA non-coding upstream 317044 4862288 ~ 4862605 (-)
G432022 NA other downstream 1540417 3000236 ~ 3003891 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 2795358 1717933 ~ 1726043 (-)
G431814 NA other downstream 3231874 1311702 ~ 1312434 (-)
G431706 NA other downstream 3380970 1163027 ~ 1163338 (-)
CI01000306_00482506_00494090 PFKLB, PFKL other downstream 4060659 482482 ~ 494090 (-)
G433450 NA other upstream 816399 5361643 ~ 5383763 (-)
G433670 NA other upstream 1495770 6041014 ~ 6041283 (-)
G433985 NA other upstream 1650863 6196107 ~ 6197210 (-)
G434016 NA other upstream 1809936 6355180 ~ 6361643 (-)
G434086 NA other upstream 1892162 6437406 ~ 6452251 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) ndrg1b LOC106606139 misc NC_048566.1 CM023220.2 5457853 ~ 5477974 (-)
eurasian perch (Perca fluviatilis) G92286 NA non-coding NC_053120.1 CM020917.1 2104413 ~ 2105048 (+)
tiger barb (Puntius tetrazona) si:ch211-220m17.5 guca2b,LOC107556375,LOC107727796,LOC107749519,LOC107581980,LOC107685730,LOC107691332 misc NC_056709.1 CM032078.1 22142053 ~ 22146937 (-)