CI01000306_05358831_05362667


Basic Information

Item Value
gene id CI01000306_05358831_05362667
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5358831 ~ 5362710 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_05358831_05362667.mRNA
TCTTTCTTGGGCAGTACTCTTAATCCTTGTTCATGACAATATTGTGAATGCTTATGGCTATAGCTCTGTCACCAATGGAGGCTATCATGGATCTTATAATCCTAAAGTGGATTATGTTGAACTACAAAGTTTCTACAGCCAGTATGATCCAGATGTAGCAGGATTATTCAGGCCCCGGGCTTCCAAGAACATTTATAGTACTGCAGTTAAGGGAGGATATGGTACTGGAAGTCTCAGTTTGCAGACTGGCTCTTCAGGTGGTCCAGTGACAAGTGTAAAACCTGATTCTGACACTAGAAGCCAACTTCAGGAATCTCAAGTTGCTTCAGCTGGAAGTGGCAGTCTTGTTCATGGCTCTGTGGGTAGTGAAGTGAGTGTGGGCATGTCAGGGTATGGTTTTAGTCAGTCAGCTAGTCTTCAAGGCTCTGATGCCATGCCTTCTCCCTTGGTATTGATGCCATTGCAGCAAAGCAATTACTCTGTTCTTAAGCCAGTGCAGCTAATGTCCCAAATTCCACTGCAAACCAGTATTGATCCTGTGGCAATGCCCGTCAGTCAACAGCTAGTGCAGACCGTCTCCCAGTCTGGTGGTCCGCAACCAGCACAAACAAGCTCTGAAACCATGGCCCAGTCCAGTAGCCAACAATTAGCCCAAGCCAGCTCCCAGTCTGCAGTAGACCGTAGACAGCTGCTTAAGCCTCAGAGAGGTAGACCTTTGCAAATTGGCTCCAGGCTTTTTTCAGGTTCCAAGCCAGGTCAGAATCAAAGCTTTGGCTTTTTCATGCCTTTGCAGACAAAAAATGAGTCCATATCACAACCCAGCTACCAAATAGAGCAACATGGAAGTCCGTTAGTCAGTCAGCAACTAGCTGAGTCCAGAGGCCAGTCCATGGTGCAGGCCAGTGGCCAGCAACCAGTACAAGTCATCTATGAAGCTAAACCAAGCAGCCAGCAACTAGCGCAGGCTTTTGGTCTGTCTGTGCCCAGTTACCAGCTTGCAGCCCAACCAGGACAGACTAGGTATCAGCCTCCATCCAGACCTAGTTCTCCATCCTTGGCTCAACGTATAGAGTCTCTTGTTCAGGCCAGTTACCAGGCCCCAGTGAGGACTGGGCAGCCTACCTATGAGTCTATGGTGCAACCCAGCCACCAAGTCCCTCCCAGACCACTGCAATCCACACTCCAGTCTGTTTTCAGACCAGCTCAGCTGCCTGAACAGCCTAGCTACCAGCCTCCAGTGCTTCCAAGCCGACAGCCTCTTGATCCAAAGGTACAACCAAGCTGCTTGCCTCTTGCCAAGCCTGGACCATCCAGTTATGGTTCTGTATTTAAGCCCAGTGGTCAACCTTCTAGGCAAATGCAGCAGCCTTGCTACCAATCTCTGGCCAAGCCAGGGCAAGAGGTGTATCGGCCCCTAGTGAAACCTATACAATCCAGCTATGGACCCTCAAGCAAGCTGGGAACTCTTGGAGACTACCAGCCTCAAATACTGCCTAGCCGCCAGTCTCTAGGTCAGCCCAGCTACAATTCCCAAGCCATGCCAGTGCAGTCCAAGTACCAGGCACAGTCAAGTTCTGAGAAAGTTTCTCAGTCTGGATACCAGATGTCTTCTATGGCAGGGCAGTCTGGTTCCCAGCCTGAAATGCTGCCTAGCCACCAGTCTCTATCTCAGTCTGGCTACTCATCCCTAGCCATGCCAGTGCAGTCCAGGTACCAGGTACAGTCAAGTTATGAGACCGTCTCTCAGCCTGGATTCCAGACCTCTTCAATGCCTGGGCAATCAAGTTACCAATCTGTATCCAGATCAGGTTCCCAAGCCCTGGAGCAGCCCAGCAATCTCTTTGTCTCAAGCGTTGAGCCTATGTCGCAGTCAGTGCAACCTGGACTTCAGTTTCCAACGCAATTGAATTACCAGTCTGTCACAGGTCAAAATGCTCCTAGACCTGCCCAAAGAAGGCCACATTCATCCAAGAGCATGTTCAGGCTGTTGCAACAATAGCTGACTACCTGTTTTTGGCTGATGTTTGTGTTTTGAAACGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_05358831_05362667.mRNA True 2042 mRNA 0.50 3 5358831 5362710

Neighbor

gene id symbol gene type direction distance location
CI01000306_04958429_04977273 NA coding upstream 381413 4958341 ~ 4977418 (+)
CI01000306_04863197_04868703 NA coding upstream 490037 4863197 ~ 4868794 (+)
CI01000306_04859604_04861501 NA coding upstream 497261 4859538 ~ 4861570 (+)
CI01000306_04789240_04793134 LRRC38, LRRC38A coding upstream 564677 4788170 ~ 4794154 (+)
CI01000306_04686121_04753101 EPHB2, EPHB2B coding upstream 605730 4686121 ~ 4753101 (+)
CI01000306_05368199_05371572 NA coding downstream 5204 5367914 ~ 5371880 (+)
CI01000306_05390270_05392867 NA coding downstream 26863 5389573 ~ 5393074 (+)
CI01000306_05399614_05410516 NA coding downstream 36604 5399314 ~ 5410886 (+)
CI01000306_05456160_05473514 NA coding downstream 93450 5456160 ~ 5473514 (+)
CI01000306_05510550_05518436 GUCY1B2 coding downstream 147840 5510550 ~ 5518954 (+)
G432988 NA non-coding upstream 546 5356031 ~ 5358285 (+)
G432984 NA non-coding upstream 3425 5353382 ~ 5355406 (+)
G433028 NA non-coding upstream 6023 5352478 ~ 5352808 (+)
G433027 NA non-coding upstream 6386 5351369 ~ 5352445 (+)
G433026 NA non-coding upstream 7504 5351014 ~ 5351327 (+)
G432992 NA non-coding downstream 65176 5427886 ~ 5429149 (+)
G432941 NA non-coding downstream 86081 5448791 ~ 5453426 (+)
G433062 NA non-coding downstream 136282 5498992 ~ 5499226 (+)
G433064 NA non-coding downstream 142202 5504912 ~ 5505154 (+)
G432970 NA non-coding downstream 159451 5522161 ~ 5522923 (+)
G432678 NA other upstream 836295 4522182 ~ 4522536 (+)
G432583 NA other upstream 1031009 4326402 ~ 4327822 (+)
CI01000306_03807268_03810946 NA other upstream 1549833 3807268 ~ 3811243 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other upstream 1575812 3778052 ~ 3783019 (+)
CI01000306_03772689_03777211 DYNLRB1 other upstream 1581281 3772689 ~ 3777550 (+)
G432958 NA other downstream 296218 5658928 ~ 5660169 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other downstream 617803 5975822 ~ 5986288 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other downstream 743433 6106143 ~ 6108175 (+)
G433724 NA other downstream 745901 6108611 ~ 6129778 (+)
G434545 NA other downstream 1756607 7119317 ~ 7119859 (+)

Expression


Co-expression Network