CI01000306_05506906_05508492


Basic Information

Item Value
gene id CI01000306_05506906_05508492
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5506132 ~ 5508657 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_05506906_05508492.mRNA
ACATATTTAAACTATATAGGCTACCATACGTTTACCTGAAATGTCGTAGTAGCCTGTATTTGTCATTATAGAATGTTACGGAATGTTACTACAAGTCTATATTGTCAAACATTTCCATATAAGAATAATAGTATTGTGTTTAAGTTCGAATTTTCCACCTTGGAAATGAGGAGGACAAAGAGACATTTGAAGAATCTGAAATTTGGAAGTTCAGACCAGGGAAACTTCCCTGGAAACTCCTCTTGTAAAACTCCGCACGCAGGTGGATGCAATAAAAGCCGTCTCACAGTTGCAAGTCTGGGCATATCCTTGAGAAGGCACCATAAGAAGACACCTTGGGTCTCTTTTAAGAGTTTACAGAAGACCTTTGGACTCCCTGTTCTACATTTAGTGGTTAATTGTGCAGGGAATCTACCTTCAGGTGCAATAAAATCTAGTTTAAAAGCTGCGTTTGATGACTGTAGCCGCAGTGTTTTGACATTCATCGCATTGACAGACGACGAGGCGAAATCAATCGGACAAAATCAAGTGAAGGTGTTCATTTCCAAATGCAAAGTTCTTAAAATGTTTTGTGAAACTTCTCTGTGGAGCATGGGAAGCGACGAACATCTTCAGACAACCAGGGATCCAATATGCCTGGTGGAAATCTCATCAGGAAGATCTGTGTCCATTGAGGACATGAGTGGAGAAGGATGGATATCTGAATACCAGACGCCATCCAAACAGGATCGCAGGATCATCAGTAAACCACATAAAACAGTCATAAAACGAATCTTCCACTCTGCAAAGTCCTGGGCCTTCCTCCAGTTCAAGGCATCCACACCAGCATGATGGGACAAGTGACCCTGCTGTGTGAAAAAGACTTTTAAAAGGACTTGCATGTTGAACATGTTAATTTATCATATAGTATGCTTTTTTATGCTTTTATTTAGTAGTAAATCAAATTAAACATGGACTCTATTTATTAAGGAGAAATTGGATGCTTGTTTCTTTAGGTACGTAATGTCAGGCATCTGCTGTTCCTTTGAGATTCCACCAGAGGGCAGGAATGAGATCACTGCCACTGTAATAAA
>TU497783
CTTGAGAAGGCACCATAAGAAGACACCTTGGGTCTCTTTTAAGAGTTTACAGAAGACCTTTGGACTCCCTGTTCTACATTTAGTGGTTAATTGTGCAGGGAATCTACCTTCAGGTGCAATAAAATCTAGTTTAAAAGCTGCGTTTGATGACTGTAGCCGCAGTGTTTTGACATTCATCGCATTGACAGACGACGAGGCGAAATCAATCGGACAAAATCAAGATGTTTTGTGAAACTTCTCTGTGGAGCATGGGAAGCGACGAACATCTTCAGACAACCAGGGATCCAATATGCCTGGTGGAAATCTCATCAGGAAGATCTGTGTCCATTGAGGACATGAGTGGAGAAGGATGGATATCTGAATACCAGACGCCATCCAAACAGGATCGCAGGATCATCAGTAAACCACATAAAACAGTCATAAAACGAATCTTCCACTCTGCAAAGTCCTGGGCCTTCCTCCAGTTCAAGGCATCCACACCAGCATGATGGGACAAGTGACCCTGCTGTGTGAAAAAGACTTTTAAAAGGACTTGCATGTTGAACATGTTAATTTATCATATAGTATGCTTTTTTATGCTTTTATTTAGTAGTAAATCAAATTAAACATGGACTCTATTTATTAAGGAGAAATTGGATGCTTGTTTCTTTAGGTACGTAATGTCAGGCATCTGCTGTTCCTTTGAGATTCCACCAGAGGGCAGGAATGAGATCACTGCCACTGTAATAAAACATTTGTGTTGACAAGGGATGCGTCTCAATCAGCTCCCTAGTTCAGTAGTCAGGGCACTGATCATGGAGTTGGCCATTTTAAGGGCTGTCTCAATCACAAAATCCTTCCAGTGCTCTGAAACGTTTGCTCCATAAAAAGTCCCACAGTGAACTGTGAAAACCAGGGAGCATCGATGCTCACTATGTTCCCTTAAGTTCTGAAGCACGGAACATAAATCACGTGGGCCAACTCACCACACATAGTGACAACCAAGTTTTTGTTTCATATTACTGTAGGTTGAGCTGGTCAGATTGGACTATTTTGTGAAGGAATTAAACAAATGAAATATTAAGTAATTGTTGTTATATATGATTACGTAGGCTACATGAATATTAACTGTTAATTTACAGTATGGAAGATGTGATTTCTCTTTGTATTGTGTCTGTGTATGTTTACAGCTAAATTCAAAATGCACTAAAATGGCTTTCAAGATATGTGTATTTGTATATAATATAATCTATGGTTTATTAATAAAGTATGTTTAAATTGTA

Function

NR:

description
hypothetical protein cypCar_00020617

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_05506906_05508492.mRNA False 1073 mRNA 0.40 3 5506664 5508657
TU497783 True 1262 lncRNA 0.39 2 5506132 5508349

Neighbor

gene id symbol gene type direction distance location
CI01000306_05476895_05478400 NR0B1 coding downstream 28099 5476396 ~ 5478565 (-)
CI01000306_05452986_05453456 RPL22 coding downstream 53208 5452864 ~ 5453456 (-)
CI01000306_05414347_05434965 CHD5 coding downstream 71699 5414271 ~ 5434965 (-)
CI01000306_05250669_05357112 ARHGEF10L, ARHGEF10LA coding downstream 149552 5250669 ~ 5357112 (-)
CI01000306_05007257_05008896 NA coding downstream 497768 5006631 ~ 5008896 (-)
CI01000306_05520026_05523437 PLEKHA3 coding upstream 11335 5519992 ~ 5523437 (-)
CI01000306_05544881_05552941 CYBB, GP91PHOX coding upstream 35855 5544512 ~ 5552941 (-)
CI01000306_05555926_05562924 XK coding upstream 47269 5555926 ~ 5562949 (-)
CI01000306_05606914_05611346 FIGF, VEGFD coding upstream 97948 5606605 ~ 5611346 (-)
CI01000306_05619706_05631189 PIR coding upstream 110979 5619636 ~ 5631189 (-)
G433541 NA non-coding downstream 7090 5499341 ~ 5499574 (-)
G433539 NA non-coding downstream 8480 5497974 ~ 5498184 (-)
G433536 NA non-coding downstream 15508 5490935 ~ 5491156 (-)
G433532 NA non-coding downstream 31259 5475121 ~ 5475405 (-)
G433504 NA non-coding downstream 44913 5461533 ~ 5461751 (-)
G433527 NA non-coding upstream 9173 5517830 ~ 5518379 (-)
G433550 NA non-coding upstream 16511 5525168 ~ 5526352 (-)
G433518 NA non-coding upstream 54761 5563418 ~ 5563669 (-)
G433561 NA non-coding upstream 59258 5567915 ~ 5590563 (-)
G433583 NA non-coding upstream 164755 5673412 ~ 5673651 (-)
G433450 NA other downstream 122901 5361643 ~ 5383763 (-)
CI01000306_04544349_04545034 NA other downstream 961572 4542723 ~ 4545244 (-)
G432022 NA other downstream 2502773 3000236 ~ 3003891 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 3757714 1717933 ~ 1726043 (-)
G431814 NA other downstream 4194230 1311702 ~ 1312434 (-)
G433670 NA other upstream 532357 6041014 ~ 6041283 (-)
G433985 NA other upstream 687450 6196107 ~ 6197210 (-)
G434016 NA other upstream 846523 6355180 ~ 6361643 (-)
G434086 NA other upstream 928749 6437406 ~ 6452251 (-)
G434338 NA other upstream 1357999 6866656 ~ 6866936 (-)

Expression


Co-expression Network