CI01000306_05520026_05523437 (PLEKHA3)


Basic Information

Item Value
gene id CI01000306_05520026_05523437
gene name PLEKHA3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5519992 ~ 5523437 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_05520026_05523437.mRNA
ATGGAAGGAGTGCTTTACAAATGGACAAACTATATGACAGGATGGCAGCCAAGGTGGTTTGTGCTGGACAATGGCATTATTTCATACTATGATTCACAAGATGACGTGTGCAAAGGCAGTAAAGGCAGTATTAAGATGTCAGTATGTGAAATTAAAGTTCACCCAACTGACAGTACGCGTCTGGAGCTGATCATACCAGGGGAGCAGCATTTTTATGTGAAGGCTGTAAATGCAGCTGAGAGGCAGAAGTGGCTGGTGGCTCTGGGGAGCTCCAAAGCTGGACTAATTGACACTCGAACCAAAAAAGAAAGGGAGTTAACAGAAACCACAGAATCACTGAAAACTAAGATGTCAGAGCTGCGTCTGTATTGTGACTTACTAATGCAGCAGGTGCACACTATTCAGGAGTCTGTGGAACAGGAAGGAGAATCTACTGTGGCCAGCACTGAGACAAGGAATGAGGCATCCTCATTACTGAGTGCCACCTGTGAAACCTTCATCAAAACACTGGAAGAATGTATGAAAATTGCCAATTCCAAGTTTCAGACTGATATGTTGCAATCCAGTCCATCTGATTCCGTAATGTCTCCCGTCCAGATGTCTCGGATGAAGCGGTCGATCAGCCATCCCGGCACCTACAATTATGAAAGGTCGAGCTTGCCAAAAGAGTGCATGGCGTTGCAGAAGTTCACCCAGAGGCGGACGCGGACATGCTCTGATACAGAGGCTCACAGCGACAGAGGGGCCGAGGAGACGGAGCGCTTGATGTTTCACAAAGCCAACATTAATGGTGACTCCGCTCCAAGTATCCCTGAAGAGGTTGGAACCAGCACAAAGTTCCTGTCGGAAACTGACACTCCGGAATCTGACCTTTCCCTCTGAGCCATGCGAGATGGATTATGAGATGGGGAATAAA

Function

symbol description
plekha3 Predicted to enable ceramide 1-phosphate binding activity and ceramide 1-phosphate transfer activity. Predicted to be involved in ceramide transport and intermembrane lipid transfer. Predicted to be active in cytosol and membrane. Orthologous to human PLEKHA3 (pleckstrin homology domain containing A3).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K20313 PLEKHA3, FAPP1; pleckstrin homology domain-containing family A member 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_05520026_05523437.mRNA True 916 mRNA 0.47 8 5519992 5523437

Neighbor

gene id symbol gene type direction distance location
CI01000306_05506906_05508492 NA coding downstream 11335 5506132 ~ 5508657 (-)
CI01000306_05476895_05478400 NR0B1 coding downstream 41427 5476396 ~ 5478565 (-)
CI01000306_05452986_05453456 RPL22 coding downstream 66536 5452864 ~ 5453456 (-)
CI01000306_05414347_05434965 CHD5 coding downstream 85027 5414271 ~ 5434965 (-)
CI01000306_05250669_05357112 ARHGEF10L, ARHGEF10LA coding downstream 162880 5250669 ~ 5357112 (-)
CI01000306_05544881_05552941 CYBB, GP91PHOX coding upstream 21075 5544512 ~ 5552941 (-)
CI01000306_05555926_05562924 XK coding upstream 32489 5555926 ~ 5562949 (-)
CI01000306_05606914_05611346 FIGF, VEGFD coding upstream 83168 5606605 ~ 5611346 (-)
CI01000306_05619706_05631189 PIR coding upstream 96199 5619636 ~ 5631189 (-)
CI01000306_05631903_05640235 NA coding upstream 108296 5631733 ~ 5640235 (-)
G433527 NA non-coding downstream 1613 5517830 ~ 5518379 (-)
G433541 NA non-coding downstream 20418 5499341 ~ 5499574 (-)
G433539 NA non-coding downstream 21808 5497974 ~ 5498184 (-)
G433536 NA non-coding downstream 28836 5490935 ~ 5491156 (-)
G433550 NA non-coding upstream 1731 5525168 ~ 5526352 (-)
G433518 NA non-coding upstream 39981 5563418 ~ 5563669 (-)
G433561 NA non-coding upstream 44478 5567915 ~ 5590563 (-)
G433583 NA non-coding upstream 149975 5673412 ~ 5673651 (-)
G433595 NA non-coding upstream 234761 5758198 ~ 5815869 (-)
G433450 NA other downstream 136229 5361643 ~ 5383763 (-)
CI01000306_04544349_04545034 NA other downstream 974900 4542723 ~ 4545244 (-)
G432022 NA other downstream 2516101 3000236 ~ 3003891 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 3771042 1717933 ~ 1726043 (-)
G431814 NA other downstream 4207558 1311702 ~ 1312434 (-)
G433670 NA other upstream 517577 6041014 ~ 6041283 (-)
G433985 NA other upstream 672670 6196107 ~ 6197210 (-)
G434016 NA other upstream 831743 6355180 ~ 6361643 (-)
G434086 NA other upstream 913969 6437406 ~ 6452251 (-)
G434338 NA other upstream 1343219 6866656 ~ 6866936 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location