CI01000306_05617258_05617548


Basic Information

Item Value
gene id CI01000306_05617258_05617548
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5617258 ~ 5618090 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_05617258_05617548.mRNA
GACGACCCCTTGGTGTTGTCATCCGTCTTGGACCGGCCAAATTTGGCCCAGTGCCTCCACAGACCCAGATGTGTCACACCATATATGTGTTTGCTCACATCCAGTATTTTCCAGCCGCCAGTGCGTGCAAGGCCATCTGGGAGGCGTGCACGTCTGTCCCGTCGCTGTGCGCTCCAGTCCCACTCCACTGTCACCACGTTTCCTGCTTGCAGACTTCCAGGCTCAGTTGCTCGCACACAGGAACATGTGGTTTTAAATGTGATCCAGACCTCTACAGAGGGCAAGGAGTGAAGGAGGGGGAAGAGGAGGAAGAGGAGGAGGGAAGGGGGAACAGAGGGATGAAGGGAGAAGAGAGAGAGTGCGAGGAAAAGACAGACTGAATCCAGCCAATATCCCACTTAAATGCAGCAAAGTGGCGGGATGAAAAAGGAGGGGAGCTAAGCCGACATGCCCTTTCTCTCGTTCTCTGCGAGTGTGCGCGTCACTCTCAAGCAGATCCAACAATGAGCTTGTAATACGAGTCGGGAATTAGAGGGAGCTTTAATGCAGCGTAATGGGTTGTGAGTGCCGTTCTCTGCACCCACACTCTGTGCTCTATCAGATCATCTGAATGCTTTTACTTTAAAAGCTTCAGAGGAATCTATTATCAGTGGGTCAAAGGAAATCTATTACATGATTGTTTGTGTAGATTCTGGACATGGTCACTTTTATAAAATGTGAATGAACTGTGTGGTCACATCCTCAGGGTTAACATAAAGGAAACTTGCCACAGATATTAGATAAAGGAAAACATGTTGTGATCAGATACAATGTGAACCAGAGCCAGATACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_05617258_05617548.mRNA True 833 mRNA 0.49 1 5617258 5618090

Neighbor

gene id symbol gene type direction distance location
CI01000306_05581415_05587605 GRPR coding upstream 29597 5581268 ~ 5587661 (+)
CI01000306_05568573_05569674 NA coding upstream 47270 5568371 ~ 5569988 (+)
CI01000306_05525004_05533724 RPGRB coding upstream 83534 5525004 ~ 5533724 (+)
CI01000306_05510550_05518436 GUCY1B2 coding upstream 98304 5510550 ~ 5518954 (+)
CI01000306_05456160_05473514 NA coding upstream 143744 5456160 ~ 5473514 (+)
CI01000306_05650597_05655729 NA coding downstream 32507 5650597 ~ 5655953 (+)
CI01000306_05680240_05680527 NA coding downstream 61656 5679746 ~ 5681035 (+)
CI01000306_05740500_05745336 NHSB, NHS coding downstream 122231 5740321 ~ 5745473 (+)
CI01000306_05755968_05757253 NA coding downstream 137689 5755779 ~ 5757390 (+)
CI01000306_05805669_05822854 CDKL5 coding downstream 187579 5805669 ~ 5823408 (+)
G433070 NA non-coding upstream 43185 5573601 ~ 5574073 (+)
G433066 NA non-coding upstream 52020 5565027 ~ 5565238 (+)
G433065 NA non-coding upstream 53586 5563418 ~ 5563672 (+)
G432970 NA non-coding upstream 94335 5522161 ~ 5522923 (+)
G433064 NA non-coding upstream 112104 5504912 ~ 5505154 (+)
G432947 NA non-coding downstream 46825 5664915 ~ 5673295 (+)
G432991 NA non-coding downstream 267110 5885200 ~ 5887156 (+)
G433120 NA non-coding downstream 272871 5890961 ~ 5891184 (+)
G432961 NA non-coding downstream 273770 5891860 ~ 5892292 (+)
G432678 NA other upstream 1094722 4522182 ~ 4522536 (+)
G432583 NA other upstream 1289436 4326402 ~ 4327822 (+)
CI01000306_03807268_03810946 NA other upstream 1808260 3807268 ~ 3811243 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other upstream 1834239 3778052 ~ 3783019 (+)
CI01000306_03772689_03777211 DYNLRB1 other upstream 1839708 3772689 ~ 3777550 (+)
G432958 NA other downstream 40838 5658928 ~ 5660169 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other downstream 362423 5975822 ~ 5986288 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other downstream 488053 6106143 ~ 6108175 (+)
G433724 NA other downstream 490521 6108611 ~ 6129778 (+)
G434545 NA other downstream 1501227 7119317 ~ 7119859 (+)

Expression


Co-expression Network