CI01000306_05680240_05680527



Basic Information


Item Value
gene id CI01000306_05680240_05680527
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5679746 ~ 5681035 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000306_05680240_05680527.mRNA
TTATAAAAGGGTGATAGGCCTGTGTGTGTGTAGATCATCGTCCATGGAAGCTTTTTTATTTTAAAAACTAATACGGGTAAGGCCTGGCTCATGAATATTAATGAAGCACCTGACTGGACACTTACCAGGCGACGTCATCGTGTCCTGATTAATATTCAAGTGGCACACCTTCGCCATAGTAGAATGTGAATTTTCTCTCCGCTCCTGCCACAAGTAGACCAGTCCGTGTTTTTGCGAAGCCTCTCTCAATCCAACCTCAGCCTCAAAGCCCTGAAAGAACCAAGCAGCCTACCAAAAAGCATCCAGGACCAGAGGAGGAGCAGAGATTTTCACTGAGAAACCTCCATCCCTGTGTGATCTCCTCTAACGGGAGAGCTGAAGTGATGGCGGGTTGCGCGGAGGATTCGTGGATTTTTGCTTGACAGGCACCAGAATCTTCTGTTGGATTAGTTGATTTATTCATTTATGGGGGATTTGCATTTACCTACTGAAAAATGCCTTTTGCCAAACGGATCGTTGAGCCCCAGCTGCTGTGCAGACATCCCATCCCTAATGATGAAGGGTTACTGTTCGAGGATCTGTGCTCCATCACCAATGTGGCTCTATCCCGGACCCTGCGGCAGCTCTCCGACCTGTCCAAACACGCCTGCTCCTTATTTCAGGAGCTTGAGAACGAAATAGTCTCCACAAACCAACGGGTTTGGGCTCTGCAGAACAAAATAGGCAAAATTCAGCAAACCGCCAGTGCGCTGGATCCAAAACTGGAGGCTGTGCGTAAGTAGACCATTACGCGTAAATTATATGGCTTGGTGATTTTACACATGAAAGTGGGGTGGTTTGTAAATGATTGGAAAAGAATGAATGAATGTGGTGGTTATATGTGTCAAGTCACATGTAGACACTGCATCGAAGCTTTGCCGAGCAAATTATAATGTGTCACACGCCTGTATGCGTAACCAACACCTGCACCGTGACCGGGTGCGCTTTTCGCTACGAACCGAAAAACGTCTTGAGACACAGCAACCCATCGCTGCATATGGTTTTTTATAGTTTATATGTGTGATCGTTCAGATTTGTAACACATAAGGAGACAGTCTTGGTCATTTTCAGCAGCTGTTTGGAGAGGGGCGTGTAGGTGCCAGTGGCTATTTCAATTCGACTGCTTATTAAAATGGGTAAACGCAACAGCTATCTCTGCAGGTATGACATGATATTTTTTTTTTTTTAATTTAATTTTTCGATCATAATAAGAAATCTATAGCATCTTCGTTTAAAACGCATAATTGCATA

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000306_05680240_05680527.mRNA True 1290 mRNA 0.45 1 5679746 5681035
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Neighbor


gene id symbol gene type direction distance location
CI01000306_05650597_05655729 NA coding upstream 23793 5650597 ~ 5655953 (+)
CI01000306_05617258_05617548 NA coding upstream 61656 5617258 ~ 5618090 (+)
CI01000306_05581415_05587605 GRPR coding upstream 92085 5581268 ~ 5587661 (+)
CI01000306_05568573_05569674 NA coding upstream 109758 5568371 ~ 5569988 (+)
CI01000306_05525004_05533724 RPGRB coding upstream 146022 5525004 ~ 5533724 (+)
CI01000306_05740500_05745336 NHSB, NHS coding downstream 59286 5740321 ~ 5745473 (+)
CI01000306_05755968_05757253 NA coding downstream 74744 5755779 ~ 5757390 (+)
CI01000306_05805669_05822854 CDKL5 coding downstream 124634 5805669 ~ 5823408 (+)
CI01000306_05826877_05830536 RS1, RS1A coding downstream 145046 5826081 ~ 5831069 (+)
CI01000306_05835418_05846769 PPEF1 coding downstream 154383 5835418 ~ 5846959 (+)
G432947 NA non-coding upstream 6451 5664915 ~ 5673295 (+)
G433070 NA non-coding upstream 105673 5573601 ~ 5574073 (+)
G433066 NA non-coding upstream 114508 5565027 ~ 5565238 (+)
G433065 NA non-coding upstream 116074 5563418 ~ 5563672 (+)
G432970 NA non-coding upstream 156823 5522161 ~ 5522923 (+)
G432991 NA non-coding downstream 204165 5885200 ~ 5887156 (+)
G433120 NA non-coding downstream 209926 5890961 ~ 5891184 (+)
G432961 NA non-coding downstream 210825 5891860 ~ 5892292 (+)
G433123 NA non-coding downstream 226252 5907287 ~ 5909232 (+)
G432958 NA other upstream 19577 5658928 ~ 5660169 (+)
G432678 NA other upstream 1157210 4522182 ~ 4522536 (+)
G432583 NA other upstream 1351924 4326402 ~ 4327822 (+)
CI01000306_03807268_03810946 NA other upstream 1870748 3807268 ~ 3811243 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other upstream 1896727 3778052 ~ 3783019 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other downstream 299478 5975822 ~ 5986288 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other downstream 425108 6106143 ~ 6108175 (+)
G433724 NA other downstream 427576 6108611 ~ 6129778 (+)
G434545 NA other downstream 1438282 7119317 ~ 7119859 (+)
CI01000306_09225597_09230504 NA other downstream 3544530 9225512 ~ 9231333 (+)

Expression


CI01000306_05680240_05680527 Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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CI01000306_05680240_05680527 Expression in each Bioproject

Bar chart with 19 bars.
CI01000306_05680240_05680527 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014162 nhs,LOC103378685 coding CM030128.1 CM030128.1 3044338 ~ 3044745 (+)