CI01000306_05805669_05822854 (CDKL5)


Basic Information

Item Value
gene id CI01000306_05805669_05822854
gene name CDKL5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5805669 ~ 5823408 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_05805669_05822854.mRNA
TTGTTTGTTTTACATATTGAGTCCATTAACAGCTTGCAAATAAAGCTTGTGTTTGAGAAAGCGCTCAAACTGATTTACATATCTGGTTTGCAGGAGACAAAAGAGCTTGTGGCCATTAAGAAGTTCAAGGACAGTGAAGAGAATGAGGAAGTTAAAGAGACGACGTTACGAGAGCTCAAGATGCTCCGTACGCTGAAGCAAGACAACATCGTAGAACTGAAAGAGGCTTTTCGTCGACGGGGAAAACTCTATCTAGTGTTTGAATATGTGGAAAAGATAGTGTTTTGCTATATATTTCAGAATATGCTTGAGTTGTTGGAGGAATTGCCCAATGGTGCGCCACCTGATAAAGTACGAAGCTACATCTTTCAGCTGATCAAAGCTATTCACTGGTGCCACAAGAATGAGATCGTTCACAGGGATATCAAGCCTGAAAATCTCCTCATCAGTGCCAATGATATCCTGAAGCTGTGTGATTTTGGCTTTGCCCGCAATCTCTCAGAAGGCAGTGATGCTAACTACACTGAGTATGTGGCGACCAGGTGGTACCGCTCACCTGAACTGCTCCTGGGAGCTCCATATGGGAAGGCGGTGGACATGTGGTCAGTGGGGTGTATTTTGGGAGAACTGAGTGATGGGCAGCCCCTGTTTCCAGGCGAGAGTGAAATCGACCAGCTCTTCACTATTCAGAAGGTGTTGGGCCCCTTACCACCAGAGCAGATGAAGCTGTTCTACAACAACCCTCGTTTCGCCGGACTAAGATTTCCTTCTGTAAGTCATCCTCAGACGCTTGATAGAAGGTACCTTGGCATTATCAATGGACTCATGTTGGATTTAATGAAGAACCTGCTGTGCCTGAACCCCACCGAACGCTTTCTGACAGAACAGTGTCTGAACCACCCAGTGTTTCAGGGTCTGAGAGGGCCTGAGCGGCCAGCTGCCCCATCACCCACCCCACCTCGCTCCTCAAAGAGAAAACCATACCATGGAGACAACACCATACCCAGCCGGAGCCACGGCAGTAAGAGTTCAGGTCACCGGCGCGCTAACAGCAAGGACTGCTCGTCTCTCCCGCGCCATGAGGACCTCCACCGGAGCACCGACAGCTTCCTGAACGGCAGCAACATGCCAACCTCATCCACCCTGAGTCCCACGCTACACCCCAAGAGCTACCAGGCCCAGACCCTGAGCCGCTCAGCGTCTTGCAGCAAAGATCTGGCCAACAACAACCTTCCGCACCTCCTCAGCCCCAAAGACTCGAAGGGAAAGACTGAGTTTGATTTCAACCTGGGGCCTAAAGTTGGAGGTGCCACTGTAGGAGGGGACACCTCTACGGGCAAGTACCTCAAGTCGTCCAAATCAGGCCGCCACTCATCCTTCCTGGAAGGGAAGACCAGCACGCTGCAGTCTGGGGACAAGCACAGTCGCCATAACTACATGGAATCCTCGCACGGATCCATGCCTTCCACGTCCTCCTCCAAAAGCTCCTCGTCCTTCCTCAGCCTGTCCAAGAGTCATGGGGCGCTGAATGACGCTAAGTCCGTGAACAATCTCGCAGAGACACGACTCCACCTGGACGATCCCATGGTGGGATCGGGCTCAGGTTCCCGCTACTTCCCATCCAGCTGTCTAGATCTAAACGCGGCTCCTGGCAGCCCCAGAGGTGAACGGCACGCTGGAGCGGAGCGGCAGGGCCACAGCCCTAGTGGCCGAGGGAACACGCGCCTAGAAGGGGGCACTCTAGACTCGCGACGTTCTTCAGGACGGAAAAAGACGCCGGATGAACCGAAGGCTTCTGACACTCTGGACCCAAGCAGGGCCGCAGGAGCAGGGGGCCATCCACACAATCTGCCCTCACCACATGAATCCTATCCTTACGGTCTCGGCTACACCAGCCCGTTCTCCTCGCAGCAGCGACCTCATCGCCACTCCATGTACGTGCGGAGAGAGCGACACCGACCGCACGGCCAGGAGACGAATTTGGTGGTCGGGCAGGGAGTGCCGACGCGTGCCAGCAGCCTACAGCTCCTCTCGCCGCAGCTCCAGCATCGCACACTCCCACGCCACAACACCAGTTCCTCCCGAGAAGAACTCACGCAAGATCTGAGCAGGAATGACCAGTCTCCCAAAGAGAAGCCTCATTCTCGCCCCCCGATTAAAGATTCTACGAGGGACAACACAGCTTCCTTCCACTCACAACGCCCAAAAAACGAGGCTGGGATGTACCATGACACTCATATGGAGGATGGAACCTCGTCCAAGGAGAATAGAATCATCTACAGCGACTCGATGCCTCGTAGAGTGGGAAGCTTTTATAGAGTCCCCTCTCCTCGACCTGACAACTCGTTCCATGAAAGCGCCGGACAGAGCCGAGTGCCAGCGGTGGCGGCAGAAAGCACAGCCATGACAAACCACCCTAAACGTCAGACCAATTTTGACCCCTGGAATAATTCAGAGGCCATGGTCATGAACCCACCAGAGGTCCCTAAACAAAAAGAAAAACAAGGTTTTTTTCGAGCCATAAAGAAGAAAAAGAAAAAGTCACAGCCGGTTCCTAGTGAGGCCCAGCAGGAGCAGCTAGTGATACAGAGACCAGTCAAATCTTCGTCTCATCACAGCAGTCGACACCGCAACCGAGATCGTGACCGGGAACGTGACCTGGAAAGGGACAGGGAGCGTGACCGGGATCGAAACCGCGAGAGGGATCGCGATCGTGACAGGGACAACACTTGGCCGCCTGAAAAGCAGGCAGATGTGCAGCCTCAGAACCAGCCTCTGAAATCCCTGCGGAAGCTCCTACACCTCTCCTCTCCTGCTACGTCCAATCAGCCCCCACCTCCCGATCGCTCGGCAGAACTGCGCTTCCAGCCCATTCCCAACCCCCCTACCAAAGGGAACCTGAACGAGGTCAGAGGGCACCCACCAGGCAGCGTCACCCCCAATACCAAGAGCCGCAAACCCCACAACTACCCTTTGCCAGGGCAGATCGAGTCCAGCTGGCACGTCTCCGCTCTGAATCGGGCCGAGGGCGCACCGTACCCAGACCAAATGGCAAACAAAGCAGAGGCCCCCAGGGCCTCTCCGTGTCTCCCTCTGCGATCTAGACCCCACCAGCTGGTGAATAAGTGTGACTTTGCCTGTGGCACGAGCGATGGTTTACAAGCAGCTTTGCTCAAGGTTGTGAAAGTTAAGTCTGCATCTCCGTCCCGACGTGACTTCCAGCGGTCGCTTCGCGGGGATTCGGTTGCATGTGCGCATGATTCATTTAACAAACTGAATAACTGGCGGTTTTATTTTAATCCGTTTAACGGCATGTTTTTGAAGAGATAAAAGCATTGCCTCGGGACCTGGTAAAAGGGTTTCAAAGACGTAATGCAGTTATTGATCTGTTAGCGGGGAGTGCAGGTGGGAGACGCGGTGAGATTTTTGAGCGGCCCCTGAAACGCAGCACATTTCCATTCAGGCTTTCGCTGTACATTTCATCAAATTATATTTTACAAATACAGATTGAAATTAGATGGATATAAAATATGCAAAATAGCTGTATTAAGGATTCCTGGCATTTGAATACCAATGCAAACAGAGCAATATAGCATGACTTTGAGGTGAATTTATCATCTTTCATAGAGCTGCTTCTGAGTATTACATTTTTATTTATTTACGTTGATCATCACGGCAGGCACTTTGCTCAACAACTGAAGTTGCTCATAAAATCCCCCACCCAAAGAGAGTGACAGAGCATTTTCATTTCAGTAACTCTAGTGAAATATGTTCTTCAGTATTTTTACGAAAGCTTTTCTTTTTGGTTTTTGAAATAGTATCGTTTCAATGGTGCACTTTAAACAGACATTTCTCACAGGTGTTTGTGTTGATATGGTGTTTGA

Function

symbol description
cdkl5 Enables cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in positive regulation of axon extension; protein phosphorylation; and regulation of dendrite development. Predicted to act upstream of or within phosphorylation. Located in cytoplasm and nucleus. Is expressed in several structures, including eye; fin; gonad; heart; and muscle. Human ortholog(s) of this gene implicated in Rett syndrome; developmental and epileptic encephalopathy 2; intellectual disability; and visual epilepsy. Orthologous to human CDKL5 (cyclin dependent kinase like 5).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K08824 CDKL; cyclin-dependent kinase-like

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_05805669_05822854.mRNA True 3884 mRNA 0.52 16 5805669 5823408

Neighbor

gene id symbol gene type direction distance location
CI01000306_05755968_05757253 NA coding upstream 48279 5755779 ~ 5757390 (+)
CI01000306_05740500_05745336 NHSB, NHS coding upstream 60196 5740321 ~ 5745473 (+)
CI01000306_05680240_05680527 NA coding upstream 124634 5679746 ~ 5681035 (+)
CI01000306_05650597_05655729 NA coding upstream 149716 5650597 ~ 5655953 (+)
CI01000306_05617258_05617548 NA coding upstream 187579 5617258 ~ 5618090 (+)
CI01000306_05826877_05830536 RS1, RS1A coding downstream 2673 5826081 ~ 5831069 (+)
CI01000306_05835418_05846769 PPEF1 coding downstream 12010 5835418 ~ 5846959 (+)
CI01000306_05848803_05855772 NA coding downstream 25395 5848803 ~ 5855873 (+)
CI01000306_05857348_05858295 UGT1B7 coding downstream 33940 5857348 ~ 5859414 (+)
CI01000306_05864099_05864974 NA coding downstream 40691 5864099 ~ 5864974 (+)
G432947 NA non-coding upstream 132374 5664915 ~ 5673295 (+)
G433070 NA non-coding upstream 231596 5573601 ~ 5574073 (+)
G433066 NA non-coding upstream 240431 5565027 ~ 5565238 (+)
G433065 NA non-coding upstream 241997 5563418 ~ 5563672 (+)
G432991 NA non-coding downstream 61792 5885200 ~ 5887156 (+)
G433120 NA non-coding downstream 67553 5890961 ~ 5891184 (+)
G432961 NA non-coding downstream 68452 5891860 ~ 5892292 (+)
G433123 NA non-coding downstream 83879 5907287 ~ 5909232 (+)
G433134 NA non-coding downstream 98817 5922225 ~ 5972106 (+)
G432958 NA other upstream 145500 5658928 ~ 5660169 (+)
G432678 NA other upstream 1283133 4522182 ~ 4522536 (+)
G432583 NA other upstream 1477847 4326402 ~ 4327822 (+)
CI01000306_03807268_03810946 NA other upstream 1996671 3807268 ~ 3811243 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other upstream 2022650 3778052 ~ 3783019 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other downstream 157105 5975822 ~ 5986288 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other downstream 282735 6106143 ~ 6108175 (+)
G433724 NA other downstream 285203 6108611 ~ 6129778 (+)
G434545 NA other downstream 1295909 7119317 ~ 7119859 (+)
CI01000306_09225597_09230504 NA other downstream 3402157 9225512 ~ 9231333 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014171 NA coding CM030128.1 CM030128.1 3339352 ~ 3370944 (+)