CI01000306_05879886_05883498


Basic Information

Item Value
gene id CI01000306_05879886_05883498
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5878738 ~ 5884232 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_05879886_05883498.mRNA
AGTTTCCTGAAAGTGAATTAGGGAATGCAAGTTCCAATGGGAACGTAATCAAATCTTATTTCACGGGAATCCCCTTCAATTATTTATTGAGGCAATTTTGAAATTGATAGGCCAACTAGATTCTGTACGCAAAATCGTGAATTATGTTGTCCGGGGGAAGAAAAAAAAAAAAAAAAAAAACACAATTGGTCATTACCACTGCTTCCTTTACGTAGAATTTTTAAATGCGATGTATTTATTGTGGATACCCAGGTACTTTCTATCAAAGGCGTGGTTTCATTTTTAAACGATCGATCATCTCTCTTTCCAACTTTCTTCTTTCTTTTTCTTATAGTGTCCCCAGGAGATAAGCCTCTTTGCAGGCATCACCACCAAAGCTTTTGTCCTTCTAAACTAAGGACACTGAAGGTGAGTAAGGCTCTTGCAGTTGTCTTCCATTTGCTCTCATTCATTGTGAAAAAATTGCAATGTTATGTGTGCTTTGTCATTTACAGGTCTAAATCCAAAGTGGCTATTGATTTCTACAAGAATGTGATGAATGAGGCTACAGTGGGTTTTTTTCCTCACTGTCAAGATAAATGCAATTTTCATTCAAGAATTTCTAAAAAAATTTAAAAAAAATAAAAATAAAATAATAATACAAATACCTCCACCCTTTTTCTACTTTTTTTCCCCCCCGGACTAGACAAAAAGATGTTTAAAATGCATAAAATTTCCTACTCCCAGCTTTTAAAATGACGCAAACTAACACCTACAGCATCTATACAGGATCATACAGTGAAATGGCAGATGGATTTTCGATTATGGTTAACAATGTGACCACATCTCTTAACAATGAGGAGTGTAGGACACTTCTGTACCTTTGTACGGATTTGTTCACCAACAGCTGTTTGGAAGATCTGAGAGGAGCTTTGCTGGCCTTTGCCAAACAGAAACAGAATCAAGCTGGTCAATCTCAGGCTGGTGATGCCTTGCTGATGGAGCTCATGTTCCGAATGAAGCGCTTTGATATCCTAAAGAAAGTTTTCGGCACAAACAAACAACAGGTAGAAGGAATTCTGCAGAAGGGAGGCGTCCTTTCAGATTACAGGATTCTAATGGCAGATGTGAACGAAAACCTGGAGAAAGAGGAGTTACAATCTATTATTTTTCTCCTGAGCAATATCCTGCCCAAGGAAAGAATGGCTAGAGCTACTAGCTTTCTAGATGTGGTGGTGGAGTTGGAGAAGTTAGATGAAGTATCTTGTGATAAGCTAGACCTGCTTGAAGAGTGTTTGGGGAACATTAGGAGATTTGACCTTGTCAAAAGGATTCAGGCCTACAAGAATAGAGAGTTTAAAAATTTGAAGCTTTCAGTGCCTGAAACGGGGACACAACATCAACAGGCTTTTGTGGAGGAGTATCAGATAAATCCTGAGCAGAGAGGCCTGTGTGTGATAATTGACTGTGTTGGCTTTGATGGACAGATGTTGAATCAGACATTTGACCGTCTGGGATACAGGGTCATATTCCACTCTCTCCTGGGTCTGAAAGAAACTCAGAAGGTCTTGGAAGACCTGACCTGCAACAGGAGCCTTCAGAGGGTCAACAGCTTTGTCTGCTGCCTCATTAGCAGGGGAACAGACACTCATCTGTTGGCTACAGACTCTAACAGCTTTGGCTTCAGGCTGGAGGATCTCAGGCAGCTTTTCAGCCCAAACCAGTGTTCCTCTCTGGGTGGTAAACCCAAACTCTTCTTCACCCAGATCTACAGTACCACAGAAGCCCCTCTAACAGCCTCAATGGATGATGAATACCTTGAGACAGATGGACCAAAATGCCATTATTCTAGGCGGCAGTGTGCGGACACAAGGACTGTCCCACAGTCAGCGGATGTCCTTTGGAGCGTGTGCACAGCAGAGGCAAAACTGCTGGAAGGTTCTGGCCACCAATCGGTTTACCTGCATGCATTAAACTCTGCCTTAATGAGGGGACATGAGAGGAAGACGCCTATATTGGATATCATGACGGAGGTGAACAGAAACGTGTTTAGTCACAATCAGCAGAATCCTGAGAAGAAGTATCAGCTTCAACTCTCTCACACACTACGGAAGAATATTTATTTGTAACACTCGTGCAACACAACACAAACTTCTTTTTTCTTTCTGTCTTTCTTTCTTGCCCAGGCACTCGACTTCTTTTAGAATAGAATGGTTTATGTACAAAACTGTCCATATAGTGAATAAGTACGCTGGATACTGCCATCAAATGTTCTCATTATTGTATATTTTATTATATATTTGTATTTTATTTATTTATCCCCAGTGGCAGCTAATACTGTGTTGTCTGTCACAGTCACAGTGCTAGTGTCTTATTAATTAACCTAAAGTCATTAGTCAAGCTAAATGAAGTCTAATTCTATAGTACTTCTCAAAATACTTAGTGTCAGAGCAGCTTTAAAGACAATCATGCCTAGATGCTTCAAAGGAGAAAAGCAAAGTTGGCTGTGGCAGGGAAAGCAACTCTAGATGTTTAGGTGAAGAGCGAGAAGAGCTTTGGGAGGAACTAGACCTGGCGTGACAATGAATGTACATGTGATTAAATATATAGTTACATCATATGTTGTAGTAATAGTGTTCATTAAATACATTTGTTATATGTATGATGTGAGAAGCTAGGTTTAGAGTATCTTACATTGCACCCTCTTAAAATGTCCATCTTTTTCACAATTGTGTACAGGTATAATAGTAACCTTGAATAATATCCTCTGAACAATAACCTTATAGTCCCCTAATTTTAATCTAGGTATCAGTATGCTGGAGTTTTGTGACCTTAATGAGAGAAAGATTGCAGTGACAGATTGTACAATGATGGATCTCTCGAATACTGAGAAGCTAAACCATTTAGGGCTTTAAATTTGAGTTGATTTTCTGTATCTGCTAATCTCTAACAATAGTTGAGTGTAGCTGCTGTTATTTTATATTATCTTTTTATCTACAATTGGTAATGTATCATTTGTAAATTTATAATATATCTAGTTAAACCAGTCACACAACTTTAATATTAGATTATTTAAACATATATCTGCTTGTAATTAAATCACTTGCCATATCCTTGTAATCCATAACCCTTTTTTTATTGCTTCAGAGATAGGTAGCCTACTAATTGGTCTTGTAGAATTTCAGTGAAGGAACTTGATTTGTATTTGCAAATTATCAACAGAATGTGATCAAGAGCATAAAGGCGGGAAAAATGTGTAGTGGAGTATTATAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_05879886_05883498.mRNA True 3256 mRNA 0.38 7 5878738 5884232

Neighbor

gene id symbol gene type direction distance location
CI01000306_05760131_05782175 SCML2 coding downstream 96563 5759334 ~ 5782175 (-)
CI01000306_05732360_05733779 NA coding downstream 142890 5731283 ~ 5735848 (-)
CI01000306_05664945_05673274 ACE2 coding downstream 205440 5664945 ~ 5673298 (-)
CI01000306_05631903_05640235 NA coding downstream 238503 5631733 ~ 5640235 (-)
CI01000306_05619706_05631189 PIR coding downstream 247549 5619636 ~ 5631189 (-)
CI01000306_05888356_05890267 TMEM169A coding upstream 3837 5888069 ~ 5890366 (-)
CI01000306_05891607_05897232 PECR coding upstream 7341 5891573 ~ 5897325 (-)
CI01000306_05902120_05929983 MAP4K3A coding upstream 17566 5901798 ~ 5929983 (-)
CI01000306_05990444_06033972 NCX, SLC8A1, SLC8A1A, SLC8A1B coding upstream 105021 5989253 ~ 6033972 (-)
CI01000306_06048083_06049632 NA coding upstream 163607 6047839 ~ 6049632 (-)
G433656 NA non-coding downstream 26339 5849758 ~ 5852399 (-)
G433595 NA non-coding downstream 62869 5758198 ~ 5815869 (-)
G433593 NA non-coding downstream 86507 5788815 ~ 5792231 (-)
G433617 NA non-coding downstream 90667 5787733 ~ 5788071 (-)
G433583 NA non-coding downstream 205087 5673412 ~ 5673651 (-)
G433628 NA non-coding upstream 971 5885203 ~ 5887132 (-)
G433633 NA non-coding upstream 127427 6011659 ~ 6028057 (-)
G433940 NA non-coding upstream 167573 6051805 ~ 6054634 (-)
G433939 NA non-coding upstream 219607 6103839 ~ 6107564 (-)
G433948 NA non-coding upstream 254445 6138677 ~ 6139696 (-)
G433450 NA other downstream 494975 5361643 ~ 5383763 (-)
CI01000306_04544349_04545034 NA other downstream 1333646 4542723 ~ 4545244 (-)
G432022 NA other downstream 2874847 3000236 ~ 3003891 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 4129788 1717933 ~ 1726043 (-)
G431814 NA other downstream 4566304 1311702 ~ 1312434 (-)
G433670 NA other upstream 156782 6041014 ~ 6041283 (-)
G433985 NA other upstream 311875 6196107 ~ 6197210 (-)
G434016 NA other upstream 470948 6355180 ~ 6361643 (-)
G434086 NA other upstream 553174 6437406 ~ 6452251 (-)
G434338 NA other upstream 982424 6866656 ~ 6866936 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004202 cflara coding NC_007122.7 CM002895.2 30332959 ~ 30341431 (-)