CI01000306_06273326_06277287 (NACC1)


Basic Information

Item Value
gene id CI01000306_06273326_06277287
gene name NACC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 6272415 ~ 6277442 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_06273326_06277287.mRNA
ATATGCAGATATTTCTGCATACTTATGTTGATGTGGATTCTGTACAGGCCTACCCACTGGTCATTATATTATGATCATTTTATAATTGAGGTGAAAAATACCAAGTGTTTTGTGTTTTCTTTTTTCACAGACTCTGTAGTGCTGGGCTTTACGATATGGCTCAGATGCTGCAGATGGCGATTCCCAACTTTGGCAACAATGTCCTGGAGTGTCTTAATGAGCAGAGGCTTCAGGGTCTGTACTGTGATGTGTCAGTGGTGGTGAAGGGTCACACATTTAAAGCCCACCGGGCAGTGCTGGCTGCCAGCAGCTCCTACTTTCGAGATTTGTTCAACTCTGGAAGTAAGAGCTCTGTAGTGGAGTTACCACCAGCGGTTCAGCCTCAGAGCTTCCAGCAGATCCTTTCCTTCTGTTACACCGGTCGACTTAGCATGAACTTGGGTGATCAGTTTCTCTTAATGTACACAGCAGGATTCCTGCAGATTCAGCAGATTATGGAAAAAGGCACTGAGTTCTTCCTAAAGGTCAGCTCACCAAGTTGTGACTCACAGGGTCTTCACACAGAAGAAACGCCACCCTCAGAACCCCAGAGCCCTGTTACTCAAACTGGGAGCGGCTCCGTAGGAGGGGGTTCTGTCACCACTGCAGCGGCTCGGCCTACTTCCTGTCTCACACCTCTTCCATTGGTGTCAAGGGTGAAGACAGAGCAGCAACCTCAGGCCCAGCAGCCCCAACAAGAAGCATCATCATATTCAGTCGTTTGCACTCCAGTTGCAAAGCGTCTTTGGGAAGGAGCCAGTGAACGAGTGGAATCACTACCTGATCACCTCACAGTTGAATCAAGGGGAAGAGGAGTTCGAGTGAGGCAAGATTTGGCCTCTCTTCCCACTGAACTCATTGCACAGATCGGAAACCGCTGTCATCCTAAACTCTATGAAGAAGGTGACCCTGCTGAGAAACTGGAGCTAGTAACAGGCACCAGTGTTTTTATTTCACGTGCTCAGCTGATGAACTGCCACGTTAGTGCCGGGACACGCCACAAAGTGTTGCTCAGGCGGCTCCTTGCTGCCTTTTTTGACCGAAGCACTCTTGCGAATAGCTGTGGAACAGGTATCCGGTCCTCCACAAATGACCCCAACCGCAAGCCACTCGACAGTCGGGTTCTCCATGCTGTTAAGTTTTACTGCCAGAACTTTGCTCCTAGTTTCAAAGAGAGCGAAATGAACGCAATTGCTGCAGACATGTGCACTAATGCACGGCGCGTGGTACGCAAGAGCTGGATTCCGAAACTGAAGCTTCTGATGGCAGAAAGCGATGCTTATGCCAACTTCCTTCCGGACCCTGCCAAAATGGAGTCTGATGGCTTGGGAGTGGAGCATGCTTTTGAAACCGGATCCCTGGAAGGTGGTACAGCCTCTGATTCTGGCCAGTCATCTACAGATGCCCTGCAAGAAACACATTCCCGAAGAGGAGGGACCTCCGGGGACATTTGGGGTGATCTGAAGGGGAAATGGTGTCTGGAAGCTCCTGTCCAGTCTGAGAACACTGGCATGATTCTGAATGTATCTTTTTGGAGAATCCAGAAAGTTAATGTTGCTGGACATAAGATTGTATTCATCCGTTAATATTTAGTAGCTGTATATCTGCTTTTTGGACCCCATTTCCTCTTCCTGCACCGGCACCTTTTTCTTTTAAATGTTTTTATTTGAACAACATTTGTAATTTTTCGCCAACTCTTCCACTGTTTGTCTTGCCAAGTCTCCCAAGAGAAGCAGTTTGTCATGATTTGTGATATGAATTTGTAAGAGAGGCAGATTAATCTGTTTTGCTAAATCTGAAACTACTGTTGTGTTTTGATTGTTGATATAGAGGGTCTGTGCAAGATTCTCACCTTTTGAATCAATGAATAGTGAATTGTTGTCCACATGTTTTTGCATTAGCGAAATCCAAAATCTATTTTAATCATTTTATTTTGGTATATTACCAAGGCTTAATATTGTTACTTTGGTTAAATCAAATCGACAAGTTTTTACTGTCAAATATCTGCAAAGCAAATCCCAAAACACTCCCAAAAGCTTAAAAATCATTAAGGCCTTTTAAATTTCCTTTTATATCCTTAGTAGTTTTGTATAGATGGCACATGACGTAGGACTGGCGTCTGTGTGATGTGTAAATGAGTGTGTATGGCGGCTGCAGATGGTAGTTTTTGATGTGCTGTAGCTCACAGCTGAGTGCTTCATGCACCTATCACACAAGTGTGGTGCATGCTGCCGCATGGCGCATTCTGACACGCTACGTCTCAGCGCCTCTGACAGAGATGCACTAAACGCTCTGATGAAGTGGGCAGAGTGCAGTATTAGTGATTGGCACTGAACGGGCATCAGTGCCACAGCTATGGTGGTTCCAAACCACTAAAGACCACTCTGAGAGTGGAAGCTCTTTTGTAGTCTTCTTTTTATGTGGATTTGAAAAGTCAGTTTTATCTATCTTGATGGTTTCAGAAAGAGAAGTTCTTTAAGTCTGTAATCACAATAAA

Function

symbol description
nacc1 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and histone deacetylase binding activity. Involved in negative regulation of transcription, DNA-templated and positive regulation of cell population proliferation. Located in cell junction and nucleoplasm.

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description
K10486 BTBD14; BTB/POZ domain-containing protein 14

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_06273326_06277287.mRNA True 2536 mRNA 0.45 5 6272415 6277442

Neighbor

gene id symbol gene type direction distance location
CI01000306_06253870_06254391 NA coding downstream 16349 6253346 ~ 6256066 (-)
CI01000306_06244021_06244397 NA coding downstream 28018 6243935 ~ 6244397 (-)
CI01000306_06108667_06110250 NA coding downstream 162165 6108258 ~ 6110250 (-)
CI01000306_06048083_06049632 NA coding downstream 222783 6047839 ~ 6049632 (-)
CI01000306_05990444_06033972 NCX, SLC8A1, SLC8A1A, SLC8A1B coding downstream 238443 5989253 ~ 6033972 (-)
CI01000306_06289571_06299875 MAN2B1 coding upstream 11706 6289148 ~ 6300251 (-)
CI01000306_06336883_06339725 NA coding upstream 59209 6336651 ~ 6341662 (-)
CI01000306_06414819_06416263 NA coding upstream 137099 6414541 ~ 6416682 (-)
CI01000306_06741870_06743844 NA coding upstream 464417 6741859 ~ 6743942 (-)
CI01000306_06776313_06778496 NA coding upstream 498672 6776114 ~ 6778815 (-)
G434001 NA non-coding downstream 15068 6257005 ~ 6257347 (-)
G433948 NA non-coding downstream 132719 6138677 ~ 6139696 (-)
G433939 NA non-coding downstream 164851 6103839 ~ 6107564 (-)
G433940 NA non-coding downstream 217781 6051805 ~ 6054634 (-)
G433633 NA non-coding downstream 244358 6011659 ~ 6028057 (-)
G434064 NA non-coding upstream 129083 6406525 ~ 6406767 (-)
G434073 NA non-coding upstream 136311 6413753 ~ 6414174 (-)
G434079 NA non-coding upstream 148268 6425710 ~ 6425956 (-)
G434086 NA non-coding upstream 159964 6437406 ~ 6452251 (-)
G433985 NA other downstream 75205 6196107 ~ 6197210 (-)
G433670 NA other downstream 231132 6041014 ~ 6041283 (-)
G433450 NA other downstream 888652 5361643 ~ 5383763 (-)
CI01000306_04544349_04545034 NA other downstream 1727323 4542723 ~ 4545244 (-)
G432022 NA other downstream 3268524 3000236 ~ 3003891 (-)
G434016 NA other upstream 77738 6355180 ~ 6361643 (-)
G434338 NA other upstream 589214 6866656 ~ 6866936 (-)
G436446 NA other upstream 3378837 9656279 ~ 9671776 (-)
G436626 NA other upstream 3557583 9835025 ~ 9836323 (-)

Expression


Co-expression Network