CI01000306_07561305_07566290 (LIMS1)


Basic Information

Item Value
gene id CI01000306_07561305_07566290
gene name LIMS1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 7560551 ~ 7566933 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_07561305_07566290.mRNA
AGCGTTTATCAGCTAATTGACCTGGCCAGTATATCAGTGAATGAAGTAATATATGATTCCATTTAAACATTTGGGGTCGGTAAGATTTTTAAAAATGTTTTTGGAAGAAGTGTCTTGTGCTCACCAAGGCTGCATTTATTTGATCAAAAACAGTAATATTGTGAAATATTTTTACAATTTAAAATAACACTATTCTATTTGAATATATCTTAAAATGTAATTTATTCCTGTGATGGCAAAACTGAATTTTCAGCATCTTTGCAGTCTTCAGTGTCACATGAACCTTCAGAAATCATTATAATATGCTGATTCGGTGCTCATGAAACATTTATTATGTCAAAAAAAAGTTGTTGTTTTTTTTTTTTTTGTTTTTTTTTTTTGAAACTTGATACTGATTTTTATTTTCAGGATTTGGAATTAAAGTATTTTGTAACATTATAAACGTCTATACTGTCACTTTGATCAATTCAATGCGTTCTTGCTGAATAAAAGTATACATTTCTTAAAAAAAGGATCTAACTGACCCCAAACTTTTGGTAGTAGTGTGATCCTTGCATATACATTTGTTTTGTACCACAGATAAAAACTGTTCATAGTCATTGCTGTTTGTTTCTCCTAACATTGATCTGTTTCTAACAGCAACATGGCCAATGCCCTGGCAAACGCCTCGTGCGAACGGTGTAAAAGCGGCTTTGCCCCGGCAGAAAAAATAGTCAACAGCAATGGTGAGCTGTATCACGAACAGTGCTTCGTCTGCGCCCAGTGTTTCCAGCAGTTTCCTGAAGGGCTCTTTTATGAGTTTGAGGGAAGGAAATACTGTGAGCATGATTTCCAGATGTTGTTTGCTCCCTGTTGTCACCAATGTGGAGAGTTTATAATTGGGCGTGTGATTAAGGCCATGAATAACAGCTGGCACCCTGACTGTTTCTGCTGTGATATCTGCCAAGCCGTGCTCGCCGATGTTGGATTCGTCAAGAACGCTGGCCGCCATCTCTGCCGTCCATGTCATAACCGCGAGAAAGCTCGGGGCCTCGGGAAGTACATCTGTCAGAAGTGTCACGCCATCATTGAGGAACAGCCCCTCATTTTCAAAAATGACCCCTACCATCCTGACCACTTCAACTGCAGCAACTGCAGTAAGGAGCTGACTGCCGATGCTCGCGAGCTGAAAGGTGAACTCTACTGCCTCCCCTGCCATGATAAGATGGGCGTGCCGATTTGCGGAGCGTGCAGGCGTCCAATTGAGGGCCGTGTGGTCAATGCCATGGGCAAACAGTGGCACGTCGAGCATTTTGTCTGTGCCAAGTGTGAGAAGCCTTTCCTGGGACACCGTCATTACGAGAGAAAAGGTCTTGCTTACTGCGAGACTCACTACAACCAGCTCTTTGGTGATGTTTGTTACCATTGCAACCGTGTGATCGAAGGAGACGTGGTGTCTGCTCTGAATAAGGCTTGGTGTGTGAATTGCTTCTCGTGCTCAACCTGTAACACCAAGCTCACTCTCAAGGACAGATTTGTGGAGGTGGACCTGAAGCCAGTGTGTAAACACTGTTACGAACGTCTGCCGGAAGAGCTGAAACGGCGCTTGGCGAAACGTGAACGCGACTCGCGTGAACGCCGAAAGAAAGCCATCGCTGTCTGTCTGTAACCCTTTTCTCTCTTCTTCCTTCTTCATGCTCATCTGCTTCACTCGTTCTTTATCATTGGTTAGTGTTTTCAACCTCACCATTTATTTTATGTCTTTTATGTATTCTTTTCGAAAATGTTTTCCTGTTTTCACCCTAATTTACAGAAAATGTACCTTTACTGTCATATAATGCTCACTTAAACTTTAAAAATACTAATAATTTAATAACACTGGAATGTAATCTTTAGCAAACTTCAAAATTAATATGCATTTTTCATACTGTACATTATAATATGATGCTTAACTTCAATTGTAGCAATGGTTTTTGTTTTTAGTGTTTTAATTTATTTTTATTATATTATAGTATTATTATTATTTTTATTATATTATTATAATTATTAATATCAGCTATAACATCAGAATAATTGTCATTGTCAGCCAGAATTTTAATATTGGTGCATCCCTGTTTTCCAGTGTTCATTATTATCATATTCTCGATGTCATATTGATGTTTTTTCACCATTTTTTATTTTATTTTATTTTATTTTTTTGGTTTTTGGTCATTCATAAACCCAATGCATTACACTGCCCTAAAAAATAAGCACATATAATACAAATGAATGTATTTAACTGCTGAAACAGTATAGCATGTGTGTGTGTATATATATATATATAATTACATATATATAACAGTGTTATTGTATTATTGTTTATATTCTATTATATGGTTTAATAGTTTGAATTATGATTTTTAATAGAGTTAGTTAACAATAAA

Function

symbol description
lims1 Predicted to enable metal ion binding activity. Acts upstream of or within heart contraction and regulation of protein kinase B signaling. Located in Z disc and intercalated disc. Is expressed in EVL; hatching gland; heart; periderm; and polster. Orthologous to human LIMS1 (LIM zinc finger domain containing 1).

GO:

id name namespace
GO:0014704 intercalated disc cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_07561305_07566290.mRNA True 2402 mRNA 0.37 9 7560551 7566933

Neighbor

gene id symbol gene type direction distance location
CI01000306_07331303_07340271 NA coding downstream 219280 7330952 ~ 7341271 (-)
CI01000306_06998286_07073243 PCDH17 coding downstream 487308 6998286 ~ 7073243 (-)
CI01000306_06815523_06829337 NA coding downstream 731035 6815441 ~ 6829516 (-)
CI01000306_06780961_06789374 NA coding downstream 770957 6780773 ~ 6789594 (-)
CI01000306_06776313_06778496 NA coding downstream 781855 6776114 ~ 6778815 (-)
CI01000306_07680537_07684881 NXPH2B coding upstream 112935 7679868 ~ 7685987 (-)
CI01000306_07687805_07693178 NA coding upstream 120673 7687606 ~ 7693178 (-)
CI01000306_07694770_07711329 PHKA2 coding upstream 127759 7694692 ~ 7712134 (-)
CI01000306_07716780_07727777 COL6A2 coding upstream 149817 7716750 ~ 7727854 (-)
CI01000306_07745638_07782809 COL6A1 coding upstream 178676 7745609 ~ 7782809 (-)
G435967 NA non-coding downstream 16940 7543374 ~ 7543611 (-)
G435961 NA non-coding downstream 23565 7534947 ~ 7536986 (-)
G434852 NA non-coding downstream 131278 7428567 ~ 7429273 (-)
G434794 NA non-coding downstream 174171 7332281 ~ 7386380 (-)
G434747 NA non-coding downstream 249506 7310814 ~ 7311045 (-)
G436032 NA non-coding upstream 307832 7874765 ~ 7875618 (-)
G435922 NA non-coding upstream 432077 7999010 ~ 8002976 (-)
G436076 NA non-coding upstream 588322 8155255 ~ 8155486 (-)
G436095 NA non-coding upstream 644521 8211454 ~ 8211949 (-)
G436096 NA non-coding upstream 645514 8212447 ~ 8212968 (-)
G434338 NA other downstream 693615 6866656 ~ 6866936 (-)
G434086 NA other downstream 1108300 6437406 ~ 6452251 (-)
G434016 NA other downstream 1198908 6355180 ~ 6361643 (-)
G433985 NA other downstream 1363341 6196107 ~ 6197210 (-)
G433670 NA other downstream 1519268 6041014 ~ 6041283 (-)
G436446 NA other upstream 2089346 9656279 ~ 9671776 (-)
G436626 NA other upstream 2268092 9835025 ~ 9836323 (-)
G436643 NA other upstream 2455215 10022148 ~ 10025375 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location