XLOC_012772


Basic Information

Item Value
gene id XLOC_012772
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20328119 ~ 20376935 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027105
GTGTGGCGAACTGAAAATTCTACACGGCCAGTGACCAACAACAGACCCATTTAGGATGACATATTGGTCTAGGCTGTCCAACTCTTGGCTCGCCAAGATGAATTGTGgTATACATTGTGTCTCCTGGGTACATTTTAAATGAGGGCATTTGATGCGGCTGCAGCAGTGGAGTTTGGCATGGCTGTGCTGTGCTCAGCGGTTGGTTCAGACATTGGCCTCTTTTCCAAAGGAGAACTAATTTAGTGCAGGCAGGCTTCACAGCCAGCAGTGCTTCACTTCTAACAAGAGCAAGGTGCCTGCAGTGCTCTGATACAAGCATGTGCTTAGCTAAAACAGGAATGGTTGTGAAGGTCTTTTTAACTGCTGCACAGTCTGGATTGCATTCCAAATGCATTAAAGGAAATGCAGGCTTCACTTTTTTATTACAAAGTATATGCTATGCATTGAATTTGCTGATACAGATGTGCAAAATCCACCtaattttacaatgtggtcacaaGGTGGAAGACTTATTCACCAGTGGATAACTCAATACTCtttttatgtttatgtgtttTTCAATTTATGACTTAAGTATGGCCTGTGCTaaacataattattattgtatgttTTGCTTTACATTATAAATTTCAAACTCCtttatcaaaattattatatttattttacgaAGCATATGTTTATGATAATTACAAGATAAGAACATTTGAGGTGAGATTCGTGTCGTATCATCCAGATTATTTGgcacattctaccagaaatgtgCATTacctgtccctgaaataaaaacataaatacagtgaataaaaagtatttcatccccaAAATTTCTAAAACAGACTGATGGTTGACTTCTGTGAGCTGTTCTGTAAAAGATTATGTCATTCATttagttctcaaacttttttctttattaaaa
>TCONS_00027106
CGAACTGAAAATTCTACACGGCCAGTGACCAACAACAGACCCATTTAGGATGACATATTGGTCTAGGCTGTCCAACTCTTGGCTCGCCAAGATGAATTGTGGTTATGTGCAACAGTGGTTTGTGGATTTGGGTTGTGGTGGCTCGCTGTGTCATTTGAGTGATTTGCTATGAGATTTGTAGTGATAGCCATCAGATCAGTTCAGCCACCCCCTGCAGATTATGGACTGCTATAACTGCCGATTATGATGGCAGGTTGCTGTTCGAGAGAGATAAGAGATTACATATGAGGCACAAAACTTGATAAAAGATTCtctgtgcatgtgcgtgtgtgtgtatgtgtgtgtggttgaaTACTCCTGAAGTTTTATTAGATGGTGATTCATGTCTGGCATCATTTTCTCCATCAGACCTGCAGTGTCTGACTAAAAACCAACATGATCAGTCATGATATGAATTCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027105 False 916 lncRNA 0.37 3 20328119 20376935
TCONS_00027106 True 460 lncRNA 0.43 2 20328125 20328651

Neighbor

gene id symbol gene type direction distance location
XLOC_012771 NA coding upstream 2898 20316443 ~ 20325221 (+)
XLOC_012770 tle3a coding upstream 70608 20225961 ~ 20257511 (+)
XLOC_012769 BX890624.2 coding upstream 119990 20089381 ~ 20208129 (+)
XLOC_012768 uacaa coding upstream 245242 20047374 ~ 20082877 (+)
XLOC_012767 morf4l1 coding upstream 282812 20034023 ~ 20045307 (+)
XLOC_012773 ddb2 coding downstream 91222 20468157 ~ 20492059 (+)
XLOC_012774 rapsn coding downstream 117478 20494413 ~ 20511015 (+)
XLOC_012775 agk coding downstream 155683 20532618 ~ 20540709 (+)
XLOC_012776 wee2 coding downstream 183507 20560442 ~ 20565982 (+)
XLOC_012777 bida coding downstream 189882 20566817 ~ 20573129 (+)
XLOC_012759 NA non-coding upstream 707166 19524841 ~ 19620953 (+)
XLOC_012756 NA non-coding upstream 912079 19413097 ~ 19416040 (+)
XLOC_012752 BX548060.1 non-coding upstream 1294906 19025989 ~ 19033213 (+)
XLOC_012781 BX548061.1 non-coding downstream 644764 21021699 ~ 21023601 (+)
XLOC_012786 NA non-coding downstream 786489 21163424 ~ 21169748 (+)
XLOC_012787 BX571884.1 non-coding downstream 814730 21191665 ~ 21191784 (+)
XLOC_012790 NA non-coding downstream 1092701 21469636 ~ 21473364 (+)
XLOC_012792 CT573204.1 non-coding downstream 1701209 22078144 ~ 22081753 (+)

Expression


Co-expression Network