CI01000306_08862287_08863560 (SETMAR)


Basic Information

Item Value
gene id CI01000306_08862287_08863560
gene name SETMAR
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 8862119 ~ 8863560 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_08862287_08863560.mRNA
GGTGAAAAGAACGCACGATTGGACTTTTATATTGCATCAACTCCGAGCTTTTATGCGTGTCTAGTAGCATTTCCGGTTCCGTTTCTCGACGAGCTCAAAGTTGATAATGTTCTCTTTCACAGCAGAATCAGACATAAATGTTCAAAAAAAGACATAATGCGATCATACAGCCGGGATCTGAGTGGCGGAATCGAGAATGTTCCTGTTTTGATTGAGAAAAGTGTCCCTAAAGAGGCTTTTTCCGACTTTCAGTATGTGCCAGAGAATGTGCAAGGACCAGGTTGTGACCTTGACCCAAGTGCGGTGACCCTCCCCGGCTGTTCATGTCGTGCCAGTTCCTGCCTGCCCGACAGCTGCCCCTGCTTGAGGTTCGGCCAGACGTATGACAGCGAGGGACGTCTGAAACAACAGCAAGAGGACAGCGGCTACAGCAGGCCTGTTTTTGAATGCAATGCCCTATGTGCCTGCAGCGACTCCTGCCAGAACCGCGTCGTTCAAAAGGGTGTCGATGTTCGCCTAGGTGTTTTCAGCACCAAGGACAGGGGTTTGGGGTTGGAGGCTCTCGAGCGCCTCCCTTGTGGCCGATTCATATGCGAGTACGCTGGGGAAATAATCGGGCCTCACGAGGCCCGTCGCCGCCAGCTTTCCCAGACTCCCCTAGATATGAACTACATCATCGCTGTTCAAGAGCACAGCGGAGGGGACAGGATTACCCAGACATTCGTGGACCCCGTCGCTGTAGGCAATGTGGGGAGGTTCATCAACCACTCCTGCCAGCCCAACCTGCTCATGGTGCCCGTGCGAGTGCACTCACTGCTGCCTAGACTCGCTCTGTTTGCGAATCGAGATATAGAAAGGTATGAAGAGCTGACTTTTGACTATGCAGGTGGACAGAACAGCAGCACAGACACACTGAAATGGGATAACGCACCAAGCGGGACTGACACAGGGGCTGATGGTGATAAAACACCACAGAAAAAAGTCTGTCGTTGTGGGGCTTCAAACTGCTCAGGATTTTTACCATTAGATATGTCAGTTCTCCATTAAAAACAGTGTTTAAACTAAACTTAGAGTGTGTACTAATGATTAGAAATGTATGTTGTTTAGAGCAACTCTGGCCCTCAAGGTCACACACAAATATTATTTTTTTATTTTGTGAAAGGTTTGAATTTGGGGCAAATGTTTTCTGTGCTGATTAACATATGCATGAAAAAA

Function

symbol description
setmar Predicted to enable histone-lysine N-methyltransferase activity and zinc ion binding activity. Predicted to act upstream of or within histone lysine methylation. Predicted to be located in nucleus. Orthologous to human SETMAR (SET domain and mariner transposase fusion gene).

GO:

id name namespace
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG:

id description
K11433 SETMAR; [histone H3]-lysine36 N-dimethyltransferase SETMAR

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_08862287_08863560.mRNA True 1215 mRNA 0.49 2 8862119 8863560

Neighbor

gene id symbol gene type direction distance location
CI01000306_08710919_08824478 ITPR1 coding downstream 37641 8709604 ~ 8824478 (-)
CI01000306_08699884_08701812 BHLHE40 coding downstream 158668 8698569 ~ 8703451 (-)
CI01000306_08690665_08696165 ARL8BA, ARL8B, ARL8BB, ARL8A coding downstream 165954 8690665 ~ 8696165 (-)
CI01000306_08596204_08597372 NA coding downstream 263715 8595875 ~ 8598404 (-)
CI01000306_08533490_08558727 SEMA3FB, SEMA3F coding downstream 302965 8533428 ~ 8559154 (-)
CI01000306_08864809_08865809 BRK1, BRK1.S, BRK1.L coding upstream 1234 8864794 ~ 8866213 (-)
CI01000306_08868661_08869685 GPX1A, GPX1 coding upstream 4622 8868182 ~ 8870046 (-)
CI01000306_08950728_08950975 NA coding upstream 87069 8950629 ~ 8950975 (-)
CI01000306_08953503_08960561 RRP9 coding upstream 89480 8953040 ~ 8960782 (-)
CI01000306_08977329_08982584 NFYA coding upstream 113722 8977282 ~ 8983344 (-)
G436337 NA non-coding downstream 34668 8826604 ~ 8827451 (-)
G436211 NA non-coding downstream 393519 8468362 ~ 8468600 (-)
G436198 NA non-coding downstream 418912 8442991 ~ 8443207 (-)
G436193 NA non-coding downstream 431745 8429759 ~ 8430374 (-)
G436383 NA non-coding upstream 58054 8921614 ~ 8921940 (-)
G436386 NA non-coding upstream 60010 8923570 ~ 8923780 (-)
G436319 NA non-coding upstream 102142 8965702 ~ 8970622 (-)
G436308 NA non-coding upstream 109468 8973028 ~ 8973478 (-)
G434338 NA other downstream 1995183 6866656 ~ 6866936 (-)
G434086 NA other downstream 2409868 6437406 ~ 6452251 (-)
G434016 NA other downstream 2500476 6355180 ~ 6361643 (-)
G433985 NA other downstream 2664909 6196107 ~ 6197210 (-)
G433670 NA other downstream 2820836 6041014 ~ 6041283 (-)
G436446 NA other upstream 792719 9656279 ~ 9671776 (-)
G436626 NA other upstream 971465 9835025 ~ 9836323 (-)
G436643 NA other upstream 1158588 10022148 ~ 10025375 (-)

Expression


Co-expression Network