CI01000306_08864809_08865809 (BRK1, BRK1.S, BRK1.L)


Basic Information

Item Value
gene id CI01000306_08864809_08865809
gene name BRK1, BRK1.S, BRK1.L
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 8864794 ~ 8866213 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_08864809_08865809.mRNA
ATTGTAATAGATATTAACCTGCTCTGAATAGGAAGTTTTTGTCCAGATAGACTTCGCTGTTTAGTGGGCCGAAGGCTGATTCGTTTTGAATATTGAAGCGCCCGAGGACTTGAATGTCTGTTAATAACGTGCATCAGAATGTTATTATTTGTGTATTGTTTTTTATTCCGTTTATTTTACGTTTATTCCGTTCACACGCGCTGGCTGCATTCTAAAGTGTTTAGAAAATCACATATTAATAATACAAAGGCCAAGAGATAGAAAATTACAGATGTAGATTTTAGTCAAGCCAGAAAACCAAGTTTTTTCCCTGTAATATCCGAATGAATTCGTTGTTTGTCCATGAGGGGGCACTGCTGCTCCTTCCTCTCACACAAACAGCGGCTAACGCTAACTAGCTCACGATGGCCGGACAGGAGGATCCAGTGCAAAGGGAAATTCACCAAGACTGGGCGAACCGTGAATATATCGAAGTGATCACCAGCAGCATTAAGAAAATAGCCGATTTCCTCAATTCCTTCGATATGTCCTGCAGGTCTCGTTTAGCCACTTTGAATGAGAAGCTCACTGCTTTGGAGAGGAGGATTGAGTACATTGAAGCCAGAGTATGTTTTTATGAGTTTAGAAAGTCAAAAACAAAAGTTTGCAGGACCCCCTTGCTTTAAATTTTTTAAAATAAA

Function

symbol description
brk1 Predicted to be involved in cell motility and regulation of actin polymerization or depolymerization. Predicted to act upstream of or within actin filament organization. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of SCAR complex. Orthologous to human BRK1 (BRICK1 subunit of SCAR/WAVE actin nucleating complex).

GO:

id name namespace
GO:0008284 positive regulation of cell population proliferation biological_process

KEGG:

id description
K05752 C3ORF10, HSPC300; chromosome 3 open reading frame 10

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_08864809_08865809.mRNA False 680 mRNA 0.40 2 8864794 8866213

Neighbor

gene id symbol gene type direction distance location
CI01000306_08862287_08863560 SETMAR coding downstream 1234 8862119 ~ 8863560 (-)
CI01000306_08710919_08824478 ITPR1 coding downstream 40316 8709604 ~ 8824478 (-)
CI01000306_08699884_08701812 BHLHE40 coding downstream 161343 8698569 ~ 8703451 (-)
CI01000306_08690665_08696165 ARL8BA, ARL8B, ARL8BB, ARL8A coding downstream 168629 8690665 ~ 8696165 (-)
CI01000306_08596204_08597372 NA coding downstream 266390 8595875 ~ 8598404 (-)
CI01000306_08868661_08869685 GPX1A, GPX1 coding upstream 1969 8868182 ~ 8870046 (-)
CI01000306_08950728_08950975 NA coding upstream 84416 8950629 ~ 8950975 (-)
CI01000306_08953503_08960561 RRP9 coding upstream 86827 8953040 ~ 8960782 (-)
CI01000306_08977329_08982584 NFYA coding upstream 111069 8977282 ~ 8983344 (-)
CI01000306_08986353_09011689 SORT1A coding upstream 119192 8985405 ~ 9012125 (-)
G436337 NA non-coding downstream 37343 8826604 ~ 8827451 (-)
G436211 NA non-coding downstream 396194 8468362 ~ 8468600 (-)
G436198 NA non-coding downstream 421587 8442991 ~ 8443207 (-)
G436193 NA non-coding downstream 434420 8429759 ~ 8430374 (-)
G436383 NA non-coding upstream 55401 8921614 ~ 8921940 (-)
G436386 NA non-coding upstream 57357 8923570 ~ 8923780 (-)
G436319 NA non-coding upstream 99489 8965702 ~ 8970622 (-)
G436308 NA non-coding upstream 106815 8973028 ~ 8973478 (-)
G436405 NA non-coding upstream 223917 9090130 ~ 9090826 (-)
G434338 NA other downstream 1997858 6866656 ~ 6866936 (-)
G434086 NA other downstream 2412543 6437406 ~ 6452251 (-)
G434016 NA other downstream 2503151 6355180 ~ 6361643 (-)
G433985 NA other downstream 2667584 6196107 ~ 6197210 (-)
G433670 NA other downstream 2823511 6041014 ~ 6041283 (-)
G436446 NA other upstream 790066 9656279 ~ 9671776 (-)
G436626 NA other upstream 968812 9835025 ~ 9836323 (-)
G436643 NA other upstream 1155935 10022148 ~ 10025375 (-)

Expression


Co-expression Network