CI01000306_08953503_08960561 (RRP9)



Basic Information


Item Value
gene id CI01000306_08953503_08960561
gene name RRP9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 8953040 ~ 8960782 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000306_08953503_08960561.mRNA
AGTATAAACAATCACACAGCAGCTCATTTGAAGTGGTCGCTGTAATGTATCGTCTCTCCATGAAGCTGCGCTGTAGCGCAAACACACACACTTTAACCACCCGAGAAGAAGAACTACAGGAAGCATGTGTTTGTGGCCATGTGTGTGGCAGCCAAGTAGCGCTAAATAAACTCAGGCAATCCTAAATTACTAGGTAAAAACAAGTAGTTTTAAACGTCATCATGTCATCTTTCTTTATAAAGAAAAGGGTCATCTCTGCAGCTCTCAACAAAGGAGATTTAAAAAGAAAGAGTAATGCAGATGATGGCAAAGGGAGATCAAAAAAGTTCAATAAACGAGTGGATGAAGAAATATCGAGTGACTCAGAAAATGAAAGAGCTGATCCAAGCAGAAGAAAACAGGACGATGAAGACGATGAGCTCGAGGAGACGCCGCAAGACAAGAAACTTCGCCTGGCCAAACTTTACCTGGAGCAGCTGAGAGAGGAAGAGGACAAGAAAGCTGAGGAAGAATCATTTGAAGCGGATCTCATAGCTGGAAGACTGCAGGAGGATCTGCTGGAACAGAAAGGCAAACTGCAAAGACTCATAGCCAAAGATCTCATAGCTCCAGACCCAGAGGAGATCAGGTTGTTGAGAGGACACAAACTATCCGTCACATGTCTTGTCATCACCCCAGATGAGAAATACATCTTCTCTGCAAGCAAAGACTGCTCAATCATCAAATGGGAGGTGGAGAGTGGAAAGAAGGTGCACAAGATGGCAGGAGGACGGAAGGGAACAGAGGAGCGTCACGTGGGACACACCGCTCACGTCCTGAGTATGGCCATATCATCTGATGGGAAATACCTGGCTAGTGGGGACATGAATAAACTCATCATGATCTGGGATCCGGTGACATGTAAACATCTGTACAAGTTTACAGGACACAGAGGCGCTGTATCAGGTTTGGCCTTTAGACGAGGGACTCATACCCTCTACAGTGCATCACATGACCGCTCAATAAAAGTGTGGAGTGTGGACGAGAACGCTTATGTAGAAACCCTGTTCGGCCATCAGGACATGATCACTGGGTTGGACTGTTTGAGCAGAGAGAGATGCGTGACCGCAGGAGGACGAGACAGAACAGTCCGAGTGTGGAAAATTGCAGAAGAATCACAGCTCGTCTTTCACGGACACGAGGGCTCCATCGATTGTGTCCAGCTTATAAATGAAGAACACATGGTCACAGGTGGAGATGATGGCTCTATTTCTATTTGGACGGTTAATAAGAAGAAGCCGGTGAGCACAGTGAAGAAAGCCCACGGTAGCCATGGCAACACGGGTCTGGAGCAGCCCAACTGGGTGTCGTCCGTGGCGGCGCTGCACAACTCCGACACCGTGGCATCAGGCTCCCATAATTCAGCGGTGCAGCTGTGGAAGTGTGGGCAGGGATTCAGAGGCCTGGAGCCACTCTTCAACATCCCTGTGGCTGGATTTGTGAACAGTCTGAAGTTCTCAAACTCTGGGAAGTTTCTTGTGGCGGGAGTTGGACAGGAGCACAGGTGAAATATTTTTAAGCGTAGCGATTATCTGCATTCGCTGATGGACAAATTATTATTTCTTGTAGTGTCATTTGCAAAATCGACCAATCATTTTGTCAGTCAATAGTGCGCATTTTCAAATATTCCTTAGTAAATTGAAATTCAGATATTTTGTGTGCATTTTATTGGTGGTGGTTTAATTGTATGGTATTCTGTATATCAACACTAGTGGTTCAACAGATCACAAAACTCAGTTCGGATCATATTACAGTTTTTGTGTCACAGATCGGATCATTTTTCAAATCAGCAAGAGAAAAAATTAGGGGGTAACTTTGTTTTCCATTTAAAACACATTTTAAGTACTCCGATACTAGAGCAAAAACTACTAACCTAACTAATAAAGTTAAAACATTATTAAAGGCAAGTGAACAGTCCATAAAAAGAACAAATACACTAATTACAAGCATAGATAAATACAATATAATAAA

Function


symbol description
rrp9 Predicted to enable snoRNA binding activity. Predicted to act upstream of or within rRNA processing. Predicted to be part of small-subunit processome. Orthologous to human RRP9 (ribosomal RNA processing 9, U3 small nucleolar RNA binding protein).

GO:

id name namespace
GO:0030515 snoRNA binding molecular_function

KEGG:

id description
K14793 RRP9; ribosomal RNA-processing protein 9

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000306_08953503_08960561.mRNA True 2010 mRNA 0.44 14 8953040 8960782

Neighbor


gene id symbol gene type direction distance location
CI01000306_08950728_08950975 NA coding downstream 2065 8950629 ~ 8950975 (-)
CI01000306_08868661_08869685 GPX1A, GPX1 coding downstream 82994 8868182 ~ 8870046 (-)
CI01000306_08864809_08865809 BRK1, BRK1.S, BRK1.L coding downstream 86827 8864794 ~ 8866213 (-)
CI01000306_08862287_08863560 SETMAR coding downstream 89480 8862119 ~ 8863560 (-)
CI01000306_08710919_08824478 ITPR1 coding downstream 128562 8709604 ~ 8824478 (-)
CI01000306_08977329_08982584 NFYA coding upstream 16500 8977282 ~ 8983344 (-)
CI01000306_08986353_09011689 SORT1A coding upstream 24623 8985405 ~ 9012125 (-)
CI01000306_09013366_09014513 PSMA5 coding upstream 52289 9013071 ~ 9014513 (-)
CI01000306_09017460_09019520 PSMA5 coding upstream 56220 9017002 ~ 9019869 (-)
CI01000306_09054500_09064951 NA coding upstream 93387 9054169 ~ 9064951 (-)
G436386 NA non-coding downstream 29260 8923570 ~ 8923780 (-)
G436383 NA non-coding downstream 31100 8921614 ~ 8921940 (-)
G436337 NA non-coding downstream 125589 8826604 ~ 8827451 (-)
CI01000306_08699884_08701812 BHLHE40 non-coding downstream 249880 8698569 ~ 8703451 (-)
G436319 NA non-coding upstream 4920 8965702 ~ 8970622 (-)
G436308 NA non-coding upstream 12246 8973028 ~ 8973478 (-)
G436405 NA non-coding upstream 129348 9090130 ~ 9090826 (-)
G436311 NA non-coding upstream 137690 9098472 ~ 9103121 (-)
G436413 NA non-coding upstream 155992 9116774 ~ 9117062 (-)
G434338 NA other downstream 2086104 6866656 ~ 6866936 (-)
G434086 NA other downstream 2500789 6437406 ~ 6452251 (-)
G434016 NA other downstream 2591397 6355180 ~ 6361643 (-)
G433985 NA other downstream 2755830 6196107 ~ 6197210 (-)
G433670 NA other downstream 2911757 6041014 ~ 6041283 (-)
G436446 NA other upstream 695497 9656279 ~ 9671776 (-)
G436626 NA other upstream 874243 9835025 ~ 9836323 (-)
G436643 NA other upstream 1061366 10022148 ~ 10025375 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004263 rrp9 coding NC_007122.7 CM002895.2 36215698 ~ 36230163 (-)
bowfin (Amia calva) AMCG00017101 rrp9 coding CM030122.1 CM030122.1 44892111 ~ 44901396 (-)